GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000976-TA|BGIBMGA000976-PA|undefined
         (1465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47093| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.74 
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  32   4.0  
SB_45101| Best HMM Match : AdoMetDC_leader (HMM E-Value=1.6)           31   5.2  
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   6.9  

>SB_47093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 34.3 bits (75), Expect = 0.74
 Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 7/131 (5%)

Query: 1126 SDSANRKLQQMNKSHQQVTSTTGQMDGTRPLEEMPYQSGEFVALKTDLNDMWPAIWRVDG 1185
            S SA+R+L  + +  QQ +  + ++ G R   E   QS EF    T +N +W    +   
Sbjct: 4    SMSADRQLYSLPRLEQQESMDSDKIPGNRDSIESTRQSSEFYPGNTTINLIWQV--KEYN 61

Query: 1186 KTLLQKYEPFEE---NGKV-LYR-NISTYTVWNPENKKLYTQVPVKVRSQTHLETTVELI 1240
            + ++  ++   +   N  V LYR N    T   P+N +   +   ++ +   L  T+E  
Sbjct: 62   RCVVVDFDNIVKTHLNINVGLYRDNRLAITSATPKNTENIKKELCRILNNNRLRITIEAN 121

Query: 1241 RSEMPFDDCNF 1251
            + E+ F D  F
Sbjct: 122  KREVNFLDVTF 132


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 31.9 bits (69), Expect = 4.0
 Identities = 23/99 (23%), Positives = 39/99 (39%)

Query: 880  VPVTGPGSGFMASYLKFLQGERDTSPPPAGRGARKXXXXXXXXXXXXXXKPYGQNDLTKS 939
            +P+ G         +K L+G R  SP P  R  +               +   ++   + 
Sbjct: 950  LPLNGYRKILSKMQIKSLRGRRSRSPSPVRRKDKDKEKRTSSTRGRSPTRKDKKDKPARR 1009

Query: 940  PCDSSVTQHSANGAMPSSNVINTGMSLGNQVMSSSASMS 978
               SS +  S++G+   S+  +TG S      SSS+S S
Sbjct: 1010 QSSSSSSSSSSSGSSSYSSSSSTGSSSSGSSRSSSSSSS 1048


>SB_45101| Best HMM Match : AdoMetDC_leader (HMM E-Value=1.6)
          Length = 153

 Score = 31.5 bits (68), Expect = 5.2
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 932 GQNDLTKSPCDSSVTQHSA--NGAMPSSNVINTGMSLGNQVMSSSASMSTTGLLGANQVH 989
           G+N    S   S+ T   A  N ++ S +V+ TG   G    + SAS+ TT  +G N V 
Sbjct: 72  GENSNISSSGSSTSTWQQAPDNTSVKSESVVETGGMWGWMSSAVSASLQTTSSIGRNLVE 131

Query: 990 SGSSNL 995
              S++
Sbjct: 132 KTKSSV 137


>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1486

 Score = 31.1 bits (67), Expect = 6.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 718  IPPPAHSSTTNQQQNGSYFDFERWNLPPPPPKMFP 752
            IPPP  ++ T+             N+PPPPP M P
Sbjct: 1209 IPPPMTNTMTHSAPRPPPMGHHMMNMPPPPPAMPP 1243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.127    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,303,753
Number of Sequences: 59808
Number of extensions: 1336112
Number of successful extensions: 2716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2711
Number of HSP's gapped (non-prelim): 6
length of query: 1465
length of database: 16,821,457
effective HSP length: 91
effective length of query: 1374
effective length of database: 11,378,929
effective search space: 15634648446
effective search space used: 15634648446
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 66 (30.7 bits)