GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000976-TA|BGIBMGA000976-PA|undefined
         (1465 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   2.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 221 NSQISSTGKQANRSGSPATATKXXXXXXXXXXXXXXXXXXGNQTDNSYSTS 271
           ++ +SST    +  G+PAT                      N T N+ +T+
Sbjct: 638 DASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATT 688


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 1388 VQLYSRISHQKYLMYVECSKRVAEKRMQNPSKDTTVILNELLADEAWLSQLFRDVRHSWA 1447
            + + S I +   L+ + C KRV++ R+        ++L  L   +  ++ L   +   WA
Sbjct: 47   LMIISAIGNTTVLILITCRKRVSKSRIH-------IMLMHLAIADLLVTFLMMPLEIGWA 99

Query: 1448 EAESWE 1453
               SW+
Sbjct: 100  ITVSWK 105


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.127    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,972
Number of Sequences: 429
Number of extensions: 12713
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 4
length of query: 1465
length of database: 140,377
effective HSP length: 67
effective length of query: 1398
effective length of database: 111,634
effective search space: 156064332
effective search space used: 156064332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 50 (24.2 bits)