Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000975-TA|BGIBMGA000975-PA|IPR001194|DENN,
IPR005113|uDENN, IPR005112|dDENN, IPR001024|Lipoxygenase, LH2,
IPR004012|RUN, IPR008994|Nucleic acid-binding, OB-fold
(1253 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 64 2e-10
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 30 2.3
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 4.1
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 29 4.1
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 29 5.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 29 5.4
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 28 9.4
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 63.7 bits (148), Expect = 2e-10
Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 216 LSPESYVYNLLYEVPVPLPGQALRLYVPPPQPHLEAIPVVIRMPNPPEELP-LLDYSLRV 274
L+ +S+V N+ +VP+P P L+L V +L A +P E+P D L
Sbjct: 410 LNLQSFVKNICCDVPLP-PKGLLQLQVNVGPLNLYAFR------SPVNEIPGWNDVDLYP 462
Query: 275 MFSNLGVELVVQLFTCVLLEHQVLLRSTDYNKLMLVSECMVSLLLPFTWAHVYVPILPAP 334
+F L + ++ LF L+E +V+ S + L S+ ++ LL P TW +Y+P+LP
Sbjct: 463 LFRALSIPNILVLFEAALMEAKVIFLSENLGMLGYASQALLHLLYPLTWQGLYIPVLPRR 522
Query: 335 LYHFLDAPVPFVMG 348
L +AP +++G
Sbjct: 523 LISCFEAPCSYIIG 536
Score = 34.7 bits (76), Expect = 0.082
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 527 FNSA-VRETFLNRFVHIFLMYENFVIMPDQDRESWLSSRES---MVNFDKASFLSDQPQR 582
FNS + TFL F+ I Y N++ P RE++ S+ S + +FD F +
Sbjct: 831 FNSQQILVTFLKFFIKILGSYRNYLRKPHMSRENFGISKGSGGLIGSFDFNKFTRQASKV 890
Query: 583 HRPFLSRFLETQMFATLIDNK 603
H ++S +Q FA I ++
Sbjct: 891 HGSWISSLCSSQAFAEFIGDR 911
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 28 EPDRLCGDNLHVSPLDRSYKGKILAHYPENVPSNQFDEHATCML 71
E +++ GD L+ + L ++ ++L+HYP N+ F ++ + +
Sbjct: 818 EKEKIEGDELYDNILKETFNEELLSHYPPNIIYATFQKYLSSFI 861
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 689 LEKMGTEESNLGFGSEVSITGVEESTMIASLCDLLERLWSHGLQHKMGKSALWMHLINYQ 748
+E + TE + +G E S+ + + S + + + L +M + ++ H I +
Sbjct: 2234 MEGVTTEANEIGSYQEPSLINIRGREVDVSSLGI-DPTFLLALPEEMREEVVFQH-IQER 2291
Query: 749 ELEQCSNSTKPIDPNYLTPDLSSVGAEVEAQQA 781
+E S+S++ IDP++L S + E+ Q+A
Sbjct: 2292 HMESISDSSRRIDPSFLEVLPSDLRDELLFQEA 2324
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 544 LMYENFVIMPDQDRESWLSSRESMVNFDKASFLSDQPQRHRPFLSRFLET 593
L NF+++P + E W++S S +D+ L QP + FL+ ++T
Sbjct: 218 LSQPNFIVLPVHNCEGWVNSTSS-YGYDEQLKLWVQPDLIKGFLTSVMKT 266
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 489 DIVKRTGVNIDDVDAETVMPTTKKKILNDEEQYNEDMRFNSAVRETFLNRFVHIFLMYEN 548
+I+++T VN +DA + K +E + D +SA E L+ ++++
Sbjct: 362 EIMQKTAVNAGFIDAAKYLLEYATKEEENEINFLSDELQSSAACECLLSLSRSVYILRTG 421
Query: 549 FVIMP-DQDRESWLSSRESMVNFDKASFLSDQPQRHRPFLSRFLETQMFATLIDN 602
+ LS ++ V S + + + P +FL T TLI N
Sbjct: 422 LADADVSEPLIKLLSDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISN 476
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 588 SRFLETQMFATLIDNKIMANWGEYDVNLQVFEYRTRIVKTNSLKRIKNAKW 638
++FL +++ TLI +++ +D +VFE+ + + S K ++ A W
Sbjct: 802 NKFLHPEVYPTLIS--VLSKNKRFDAVQRVFEHSKHLYRKISTKSLEKANW 850
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 236 QALRLYVPPPQPHLEAIPVVIRMPNPPEELPLLDYSLRVMFSNLGV--ELVVQLFTCVLL 293
++ RLY+P LE IP V+R +P + + Y+ M+S L V E ++ +
Sbjct: 372 RSTRLYIPLSSQFLEMIPFVLRRSSPLSDDKEVMYNFD-MYSTLHVPKECLLSKSYRNNV 430
Query: 294 EHQVLLRSTDY 304
+V+L T+Y
Sbjct: 431 RKEVILLMTEY 441
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,749,228
Number of Sequences: 5004
Number of extensions: 250214
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 12
length of query: 1253
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1172
effective length of database: 1,957,154
effective search space: 2293784488
effective search space used: 2293784488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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