GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000975-TA|BGIBMGA000975-PA|IPR001194|DENN,
IPR005113|uDENN, IPR005112|dDENN, IPR001024|Lipoxygenase, LH2,
IPR004012|RUN, IPR008994|Nucleic acid-binding, OB-fold
         (1253 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    29   0.15 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    29   0.20 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   5.7  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   7.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   7.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   7.5  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 29.5 bits (63), Expect = 0.15
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 212 PGPGLSPESYVYNLLYEVPVPLPGQALRLYVPP-PQPHLEAIPVVIRMPNPPEELPLLDY 270
           PGP L P  ++ N      +PLP       VPP P P + A P +I   NP     + + 
Sbjct: 160 PGPALPPAGFLCNNY----LPLP------QVPPLPLPPIFA-PTMI---NPSA---ICES 202

Query: 271 SLRVMFSNLGVELVVQLFTCVLLEHQVLLRSTDYNKLMLVSECMVSLLLPFT 322
           + +++F N+     +  FTC+ L  Q+LL    +  L ++       L+ F+
Sbjct: 203 AAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFS 254


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 0.20
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 212 PGPGLSPESYVYNLLYEVPVPLPGQALRLYVPPPQPHLEAIPVVIRMPNPPEELPLLDYS 271
           PGP L P  ++ N     P PLP Q   L +PP  P     P +I   NP     + + +
Sbjct: 160 PGPALPPTGFLCN---NYP-PLP-QVPPLPLPPIFP-----PTMI---NPSA---ICESA 203

Query: 272 LRVMFSNLGVELVVQLFTCVLLEHQVLLRSTDYNKLMLVSECMVSLLLPFT 322
            +++F N+     +  FTC+ L  Q+LL    +  L ++       L+ F+
Sbjct: 204 AQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFS 254


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 316 SLLLPFTWAHVYVPILPAPLYHF 338
           ++LLPF   H+++ I+P  L  F
Sbjct: 51  AVLLPFAIYHIFMHIVPTKLISF 73


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 542 IFLMYENFVIMPDQDRESWLSSRESMVNFDKASFLSDQPQRHRPF 586
           + L+ +N +I P      WL+ + ++++FD    L    ++H  F
Sbjct: 167 VALVVKN-LIKPTILGADWLNEQRAVIDFDNNEILLRNGEKHHSF 210


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 17/65 (26%), Positives = 24/65 (36%)

Query: 168 ALTYFDIAKDKLYVAKSIALICQYPFVRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLY 227
           ALT   + K+     K++      P   V  MF + L  S  R    G   E+  +    
Sbjct: 255 ALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLMSEGRTAFLGSPEEAETFFREL 314

Query: 228 EVPVP 232
           E P P
Sbjct: 315 EAPCP 319


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 17/65 (26%), Positives = 24/65 (36%)

Query: 168 ALTYFDIAKDKLYVAKSIALICQYPFVRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLY 227
           ALT   + K+     K++      P   V  MF + L  S  R    G   E+  +    
Sbjct: 255 ALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLMSEGRTAFLGSPEEAETFFREL 314

Query: 228 EVPVP 232
           E P P
Sbjct: 315 EAPCP 319


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,914
Number of Sequences: 317
Number of extensions: 13235
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 7
length of query: 1253
length of database: 114,650
effective HSP length: 65
effective length of query: 1188
effective length of database: 94,045
effective search space: 111725460
effective search space used: 111725460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)