GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000975-TA|BGIBMGA000975-PA|IPR001194|DENN,
IPR005113|uDENN, IPR005112|dDENN, IPR001024|Lipoxygenase, LH2,
IPR004012|RUN, IPR008994|Nucleic acid-binding, OB-fold
         (1253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    64   2e-10
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    30   2.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   4.1  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    29   4.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    29   5.4  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    29   5.4  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    28   9.4  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 216 LSPESYVYNLLYEVPVPLPGQALRLYVPPPQPHLEAIPVVIRMPNPPEELP-LLDYSLRV 274
           L+ +S+V N+  +VP+P P   L+L V     +L A        +P  E+P   D  L  
Sbjct: 410 LNLQSFVKNICCDVPLP-PKGLLQLQVNVGPLNLYAFR------SPVNEIPGWNDVDLYP 462

Query: 275 MFSNLGVELVVQLFTCVLLEHQVLLRSTDYNKLMLVSECMVSLLLPFTWAHVYVPILPAP 334
           +F  L +  ++ LF   L+E +V+  S +   L   S+ ++ LL P TW  +Y+P+LP  
Sbjct: 463 LFRALSIPNILVLFEAALMEAKVIFLSENLGMLGYASQALLHLLYPLTWQGLYIPVLPRR 522

Query: 335 LYHFLDAPVPFVMG 348
           L    +AP  +++G
Sbjct: 523 LISCFEAPCSYIIG 536



 Score = 34.7 bits (76), Expect = 0.082
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 527 FNSA-VRETFLNRFVHIFLMYENFVIMPDQDRESWLSSRES---MVNFDKASFLSDQPQR 582
           FNS  +  TFL  F+ I   Y N++  P   RE++  S+ S   + +FD   F     + 
Sbjct: 831 FNSQQILVTFLKFFIKILGSYRNYLRKPHMSRENFGISKGSGGLIGSFDFNKFTRQASKV 890

Query: 583 HRPFLSRFLETQMFATLIDNK 603
           H  ++S    +Q FA  I ++
Sbjct: 891 HGSWISSLCSSQAFAEFIGDR 911


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/44 (25%), Positives = 26/44 (59%)

Query: 28  EPDRLCGDNLHVSPLDRSYKGKILAHYPENVPSNQFDEHATCML 71
           E +++ GD L+ + L  ++  ++L+HYP N+    F ++ +  +
Sbjct: 818 EKEKIEGDELYDNILKETFNEELLSHYPPNIIYATFQKYLSSFI 861


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 689  LEKMGTEESNLGFGSEVSITGVEESTMIASLCDLLERLWSHGLQHKMGKSALWMHLINYQ 748
            +E + TE + +G   E S+  +    +  S   + +  +   L  +M +  ++ H I  +
Sbjct: 2234 MEGVTTEANEIGSYQEPSLINIRGREVDVSSLGI-DPTFLLALPEEMREEVVFQH-IQER 2291

Query: 749  ELEQCSNSTKPIDPNYLTPDLSSVGAEVEAQQA 781
             +E  S+S++ IDP++L    S +  E+  Q+A
Sbjct: 2292 HMESISDSSRRIDPSFLEVLPSDLRDELLFQEA 2324


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 544 LMYENFVIMPDQDRESWLSSRESMVNFDKASFLSDQPQRHRPFLSRFLET 593
           L   NF+++P  + E W++S  S   +D+   L  QP   + FL+  ++T
Sbjct: 218 LSQPNFIVLPVHNCEGWVNSTSS-YGYDEQLKLWVQPDLIKGFLTSVMKT 266


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 489 DIVKRTGVNIDDVDAETVMPTTKKKILNDEEQYNEDMRFNSAVRETFLNRFVHIFLMYEN 548
           +I+++T VN   +DA   +     K   +E  +  D   +SA  E  L+    ++++   
Sbjct: 362 EIMQKTAVNAGFIDAAKYLLEYATKEEENEINFLSDELQSSAACECLLSLSRSVYILRTG 421

Query: 549 FVIMP-DQDRESWLSSRESMVNFDKASFLSDQPQRHRPFLSRFLETQMFATLIDN 602
                  +     LS  ++ V     S + +   +  P   +FL T    TLI N
Sbjct: 422 LADADVSEPLIKLLSDPDTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISN 476


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 588 SRFLETQMFATLIDNKIMANWGEYDVNLQVFEYRTRIVKTNSLKRIKNAKW 638
           ++FL  +++ TLI   +++    +D   +VFE+   + +  S K ++ A W
Sbjct: 802 NKFLHPEVYPTLIS--VLSKNKRFDAVQRVFEHSKHLYRKISTKSLEKANW 850


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 236 QALRLYVPPPQPHLEAIPVVIRMPNPPEELPLLDYSLRVMFSNLGV--ELVVQLFTCVLL 293
           ++ RLY+P     LE IP V+R  +P  +   + Y+   M+S L V  E ++       +
Sbjct: 372 RSTRLYIPLSSQFLEMIPFVLRRSSPLSDDKEVMYNFD-MYSTLHVPKECLLSKSYRNNV 430

Query: 294 EHQVLLRSTDY 304
             +V+L  T+Y
Sbjct: 431 RKEVILLMTEY 441


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,749,228
Number of Sequences: 5004
Number of extensions: 250214
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 12
length of query: 1253
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1172
effective length of database: 1,957,154
effective search space: 2293784488
effective search space used: 2293784488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)