Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000975-TA|BGIBMGA000975-PA|IPR001194|DENN,
IPR005113|uDENN, IPR005112|dDENN, IPR001024|Lipoxygenase, LH2,
IPR004012|RUN, IPR008994|Nucleic acid-binding, OB-fold
(1253 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 102 2e-21
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 63 2e-09
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 54 7e-07
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766 32 3.4
08_02_1615 + 28257275-28258428,28258523-28259144 32 3.4
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 32 3.4
03_04_0230 - 19024413-19024574,19024916-19024995,19025200-19025509 32 3.4
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 31 4.4
02_04_0376 - 22474473-22476947 31 4.4
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 31 5.9
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 31 7.8
11_06_0610 - 25449085-25453284 31 7.8
02_04_0191 - 20783143-20784365,20784453-20784597,20784977-207853... 31 7.8
02_04_0089 + 19638760-19638844,19640495-19641528,19642266-19642322 31 7.8
02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941 31 7.8
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 102 bits (245), Expect = 2e-21
Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 180 YVAKSIALICQYPFVRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALR 239
+ K I + P +V + LE +F G + +L+ +VP+P PG+
Sbjct: 123 FADKCICFVSHSPSFQVLRDALEEIFVLCFSPAGCSKPLWDIISHLVSKVPLPTPGKNRV 182
Query: 240 LYVPPPQPHLEAIPVVIRMPNPPEELPLLDYSLRVMFSNLGVELVVQLFTCVLLEHQVLL 299
L+ +E + + P P E LP D S + + L V+ ++QLFT VLLE ++LL
Sbjct: 183 LFA------IENCLLSVEAP-PKEWLPHADISFQPLVQCLDVDKLIQLFTAVLLERRILL 235
Query: 300 RSTDYNKLMLVSECMVSLLLPFTWAHVYVPILPAPLYHFLDAPVPFVMGLHT--DSAAVC 357
RS Y L LVSE + L+ P W HVY+PI+ + ++DAP P++MGLH+ D++ V
Sbjct: 236 RSNKYTLLTLVSEAICHLIYPLRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGVDTSTVT 295
Query: 358 ANG 360
+G
Sbjct: 296 MDG 298
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 62.9 bits (146), Expect = 2e-09
Identities = 31/101 (30%), Positives = 55/101 (54%)
Query: 249 LEAIPVVIRMPNPPEELPLLDYSLRVMFSNLGVELVVQLFTCVLLEHQVLLRSTDYNKLM 308
+E V R+ E + L ++ + L +E V++LF LLE Q+++ ++ L
Sbjct: 706 VEKTEVNARLAAAEEAIALSIWTTATICRALSLESVLELFAAALLEKQIVVICSNLGVLS 765
Query: 309 LVSECMVSLLLPFTWAHVYVPILPAPLYHFLDAPVPFVMGL 349
+ ++ ++ PF W + +P+LP L FLDAPVPF+ G+
Sbjct: 766 AIVLSVMPMIRPFQWQSLLLPVLPRKLVDFLDAPVPFIAGV 806
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 54.0 bits (124), Expect = 7e-07
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 263 EELPLLDYSLRVMFSNLGVELVVQLFTCVLLEHQVLLRSTDYNKLMLVSECMVSLLLPFT 322
E L +++ + L +E V+ LF LLE Q+++ ++ L ++ L+ P+
Sbjct: 588 ESTALSTWAVASICGCLRLEHVMTLFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQ 647
Query: 323 WAHVYVPILPAPLYHFLDAPVPFV 346
W + +P+LP + FLDAPVP++
Sbjct: 648 WQSLLIPVLPNDMMDFLDAPVPYI 671
>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
Length = 943
Score = 31.9 bits (69), Expect = 3.4
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 624 IVKTNSLKRIKNAKWQVKDCPPELLLGDFSRRLSTEVTPAAIAQNNRTFVEKLLKECKSK 683
+ K S +I N +W K+ ++ +S+ + + + EK ++E K++
Sbjct: 504 VEKLGSEAKISNDEWASKEAGFVEMIRRSEEEMSSIKSEMSSLMVSLGAAEKQVQELKAE 563
Query: 684 TKRMLLEKMGTEESNLGFGSEVSITGV----EESTMIASLCDLLER 725
+ LL+K+ E GS +S TGV +ES L DL+ R
Sbjct: 564 -RTQLLDKLKQSELTNSEGSSISSTGVQQTADESESTVGLKDLVSR 608
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 31.9 bits (69), Expect = 3.4
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 963 FHHKNLGTLSTLRIGHDNSGLSPRWLLDQV-YVRNEVTGHTYTYPCNRWLGSGVDDGSTE 1021
F+ N GT+ L GHD L+ RWL Q+ V E T N LG D + E
Sbjct: 483 FYEPNAGTI--LLDGHDLRDLNLRWLRRQIGLVSQEPALFATTIRENLLLGR--DGATQE 538
Query: 1022 RLLVAARVRSEHT 1034
L AARV + H+
Sbjct: 539 ELEEAARVANAHS 551
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 31.9 bits (69), Expect = 3.4
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 525 MRFNSAV--RETFLNRFVHIFLMYENFVIMPDQDRESWLSSRESMVNFDKASFLSDQPQR 582
M FN+ + +E + + + L + NF + D ++W + ++ F +
Sbjct: 262 MYFNNIMLPQEGYFHSVICNSLEFRNFTVNNDLRYKAWDNPPQTEPVFLDMTHYDKMVDS 321
Query: 583 HRPFLSRFLETQMFATLIDNKIMANWG 609
PF RF E + ID ++ WG
Sbjct: 322 GAPFARRFRENESLLDKIDGNVLGRWG 348
>03_04_0230 - 19024413-19024574,19024916-19024995,19025200-19025509
Length = 183
Score = 31.9 bits (69), Expect = 3.4
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 408 YQIQRP---ETEPTKLSAPLNGTSYRHMNDNMSSSCTLPSGGLRRKHSFHDVLEWEE 461
+Q+ P EP LS P+ T Y+ + + +S P GL +++ FH + E+E+
Sbjct: 7 FQLSTPWGKSNEPPPLSGPIFTTGYKILPELISMVKEKPFPGLNQENHFHHLREFEQ 63
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 31.5 bits (68), Expect = 4.4
Identities = 21/70 (30%), Positives = 26/70 (37%)
Query: 193 FVRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALRLYVPPPQPHLEAI 252
F A FL + PR P P S S Y+ P P P R +PPP+ +
Sbjct: 17 FFPPAPPFLPSSRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSRSPLPPPEQQKQQQ 76
Query: 253 PVVIRMPNPP 262
P P P
Sbjct: 77 PPPTTPPPAP 86
>02_04_0376 - 22474473-22476947
Length = 824
Score = 31.5 bits (68), Expect = 4.4
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 207 SLPRQPGPGLSPESYVYNLLYEVPVPLPGQALRLYVPPPQPHLEAIPVVIRMP--NPPEE 264
SLPR P L+P S +L +PV L A R+ P A+PVV+R+ +PP
Sbjct: 34 SLPRLPAL-LTP-SLPESLPVPLPVRLAAAAARVAAPSRHLLAVALPVVLRLHSLSPPPL 91
Query: 265 LPLLDYSLRVMFSNL 279
PL D + ++L
Sbjct: 92 RPLFDRPFASLLAHL 106
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 31.1 bits (67), Expect = 5.9
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 205 FRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALRLYVPPPQPH 248
F P P P P+ Y ++ P P P Q Y PPPQPH
Sbjct: 50 FHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQH-HAY-PPPQPH 91
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 30.7 bits (66), Expect = 7.8
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Query: 188 ICQYPFVRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALRLYVPPPQP 247
+C P A+ L + R PR P SP S +PV LP A PPP
Sbjct: 4 VCIGPRRNFAKNGLLGILR--PRHAAPS-SP-SQPTTTSRSIPVVLPS-APSSKPPPPTQ 58
Query: 248 HLEAIPVVIRMPNPPEELP 266
+PVVI P PP+ P
Sbjct: 59 TAPPVPVVISEPPPPQPQP 77
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 7.8
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 206 RSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALRLYVPPPQPHLEAIPVVIRMPNPPEEL 265
+SLP P P P V +L PV LP A++ +PPP P P V +P P ++
Sbjct: 1278 KSLP-PPAPVSLPPPVVKSLPPPAPVSLPPPAVK-PLPPPAPVSLPPPAVKPLPPPVPQV 1335
Query: 266 PL 267
L
Sbjct: 1336 SL 1337
>02_04_0191 -
20783143-20784365,20784453-20784597,20784977-20785345,
20786164-20786250,20786405-20786603,20786733-20786818
Length = 702
Score = 30.7 bits (66), Expect = 7.8
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 226 LYEVPVPLPGQALRLYVPPPQPH 248
++ VPVP+P Q +++ +PPPQ H
Sbjct: 325 VHVVPVPVPVQPVQVQLPPPQLH 347
>02_04_0089 + 19638760-19638844,19640495-19641528,19642266-19642322
Length = 391
Score = 30.7 bits (66), Expect = 7.8
Identities = 36/131 (27%), Positives = 49/131 (37%), Gaps = 12/131 (9%)
Query: 126 LQAMYITELSSGQTPPGHRKSSGKESSRSLPRSFKLTPHTGAALTYFDIAKDKLYVAKSI 185
+ A+Y + G T + S SR P TP TY ++ + +
Sbjct: 256 VDAVYAAIQAMGHTDIDVKVSETGWPSRGDPDEAGATPENAG--TYIGNLLRRIEMKQGT 313
Query: 186 ALICQYPF-VRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALRLYVPP 244
L Q P V V +F ENL +PGP Y L Y P+ LR Y+PP
Sbjct: 314 PLRPQAPIDVYVFALFNENL------KPGPASERN---YGLFYPDGTPVYNVGLRGYLPP 364
Query: 245 PQPHLEAIPVV 255
H A V+
Sbjct: 365 MASHEAATQVI 375
>02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941
Length = 234
Score = 30.7 bits (66), Expect = 7.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 229 VPVPLPGQALRLYVPPPQPHLEAIPVVIRMP-----NPPEELPLLDYSLRVMFSN 278
+P+PLP Q R ++ P PH ++ ++ P PP YS +MF N
Sbjct: 1 MPMPLPSQVHRCHLLPAPPHSPSLVTLLYSPLLNLFTPPPATTTTLYSGDIMFIN 55
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,081,225
Number of Sequences: 37544
Number of extensions: 1553814
Number of successful extensions: 3521
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3505
Number of HSP's gapped (non-prelim): 35
length of query: 1253
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1163
effective length of database: 11,414,388
effective search space: 13274933244
effective search space used: 13274933244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)
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