GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000975-TA|BGIBMGA000975-PA|IPR001194|DENN,
IPR005113|uDENN, IPR005112|dDENN, IPR001024|Lipoxygenase, LH2,
IPR004012|RUN, IPR008994|Nucleic acid-binding, OB-fold
         (1253 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    28   1.3  
AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    25   9.4  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 396 SFIEELNHLMDKYQIQRPETEPTKLSAPLNGTSYRHMNDNMSSSCTLPSGG 446
           +F+E +     K   + P    T+L   ++G +Y+H N N S +CT+ S G
Sbjct: 567 TFVEMIKAKKIKLDHELPTLLETELGWIVSG-AYKHNNLNQSMACTIVSQG 616


>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
            protein.
          Length = 344

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 6/39 (15%)

Query: 1133 SLCDEPSTMNNKNC------GGVSYNCRQDQEHRAIWRC 1165
            S+C     M  + C      G  SY+CR+       W+C
Sbjct: 264  SICHIREVMEEQKCYKCWKVGHTSYHCREPDRSNLCWKC 302


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,293,395
Number of Sequences: 2123
Number of extensions: 54771
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 3
length of query: 1253
length of database: 516,269
effective HSP length: 72
effective length of query: 1181
effective length of database: 363,413
effective search space: 429190753
effective search space used: 429190753
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)