GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000975-TA|BGIBMGA000975-PA|IPR001194|DENN,
IPR005113|uDENN, IPR005112|dDENN, IPR001024|Lipoxygenase, LH2,
IPR004012|RUN, IPR008994|Nucleic acid-binding, OB-fold
         (1253 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.31 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   1.7  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   2.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   5.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   6.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   6.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   8.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 413 PETEPTKLSAPLNGTSYRHMND 434
           PET+PT  SA L GT+  H+ D
Sbjct: 294 PETQPTPPSATLVGTTITHLRD 315


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/81 (18%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 521 YNEDMRFNSAVRETFLNRFVHIFLMYENFVIMPDQDRESWLSSRESMVNFDKASFLSDQP 580
           YN D    S++   ++   + +FL Y  F  + ++ R++  + + ++ +    S + +  
Sbjct: 339 YNTDFIIYSSLSSFYIPCIIMVFLYYNIFKALRNRARKARANRKPNLGDIKPGSIIENIA 398

Query: 581 QRHRPF-LSRFLETQMFATLI 600
                + ++RF ET + A  +
Sbjct: 399 HTRSGYSVARFAETALGAAAL 419


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 389 PIFPHRTSFIEELNHLMDKYQ 409
           P FP   S ++  NHLM K++
Sbjct: 172 PWFPRHASDLDNCNHLMTKFE 192


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/58 (20%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 409 QIQRPE-TEPTKLSAPLNGTSYRHMNDNMSSSCTLPSGGLRRKHSFHDVLEWEESRPL 465
           ++++P  +  T  ++P+  T    + ++++S+C++ +   ++K  FH   E + S  L
Sbjct: 317 KLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTL 374


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 288 FTCVLLEHQVLLRSTDYNKLMLVS 311
           FT + LE QVLL    +N+L++ S
Sbjct: 255 FTSLPLEDQVLLLRAGWNELLIAS 278


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 288 FTCVLLEHQVLLRSTDYNKLMLVS 311
           FT + LE QVLL    +N+L++ S
Sbjct: 255 FTSLPLEDQVLLLRAGWNELLIAS 278


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 274 VMFSNLGVELVVQLFTCVLLEHQV-LLRSTD 303
           +M  +LG+ L++ +F CV++E  +  L ST+
Sbjct: 598 LMVFSLGLFLLLDMFNCVVVEETIPSLNSTN 628


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,426
Number of Sequences: 429
Number of extensions: 17096
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 7
length of query: 1253
length of database: 140,377
effective HSP length: 66
effective length of query: 1187
effective length of database: 112,063
effective search space: 133018781
effective search space used: 133018781
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)