Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000975-TA|BGIBMGA000975-PA|IPR001194|DENN,
IPR005113|uDENN, IPR005112|dDENN, IPR001024|Lipoxygenase, LH2,
IPR004012|RUN, IPR008994|Nucleic acid-binding, OB-fold
(1253 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p... 102 1e-21
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 102 1e-21
At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ... 54 5e-07
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 42 0.003
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 36 0.23
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 32 2.1
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 32 2.1
At3g23560.1 68416.m02964 MATE efflux family protein similar to r... 31 4.9
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 31 4.9
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 31 4.9
At2g19400.1 68415.m02263 protein kinase, putative contains prote... 31 6.4
At5g65080.1 68418.m08186 MADS-box family protein 30 8.5
>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 909
Score = 102 bits (245), Expect = 1e-21
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 16/213 (7%)
Query: 180 YVAKSIALICQYPFVRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALR 239
Y K I L+ P RV + LE +F G + ++ VP+P PG+
Sbjct: 122 YADKCICLVSHAPNFRVLRNSLEEIFVLCFSSEGSCKPLWDIIAYMVSNVPLPTPGKDRV 181
Query: 240 LYVPPPQPHLEAIPVVIRMPNPPEELPLLDYSLRVMFSNLGVELVVQLFTCVLLEHQVLL 299
L+ +E + + P P + LP D SL+ + L V+ +++LFT VL+E ++L+
Sbjct: 182 LFA------VENCLLSVEAP-PEDSLPQADISLQPLVQCLDVDNLIKLFTSVLVERRILI 234
Query: 300 RSTDYNKLMLVSECMVSLLLPFTWAHVYVPILPAPLYHFLDAPVPFVMGLHTDSAAVCAN 359
RS Y+ L LVSE + L+ PF W VY+P+L ++DAP P++MGLH+D
Sbjct: 235 RSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDV------ 288
Query: 360 GPRSIALCSEAALCLVDIDKPDIQLPEELPIFP 392
++A+ + +VD+D I EE+P P
Sbjct: 289 DTSNLAM---DGVVVVDLDINQITTSEEIPQIP 318
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 102 bits (245), Expect = 1e-21
Identities = 68/213 (31%), Positives = 108/213 (50%), Gaps = 16/213 (7%)
Query: 180 YVAKSIALICQYPFVRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALR 239
Y K I L+ P RV + LE +F G + ++ VP+P PG+
Sbjct: 122 YADKCICLVSHAPNFRVLRNSLEEIFVLCFSSEGSCKPLWDIIAYMVSNVPLPTPGKDRV 181
Query: 240 LYVPPPQPHLEAIPVVIRMPNPPEELPLLDYSLRVMFSNLGVELVVQLFTCVLLEHQVLL 299
L+ +E + + P P + LP D SL+ + L V+ +++LFT VL+E ++L+
Sbjct: 182 LFA------VENCLLSVEAP-PEDSLPQADISLQPLVQCLDVDNLIKLFTSVLVERRILI 234
Query: 300 RSTDYNKLMLVSECMVSLLLPFTWAHVYVPILPAPLYHFLDAPVPFVMGLHTDSAAVCAN 359
RS Y+ L LVSE + L+ PF W VY+P+L ++DAP P++MGLH+D
Sbjct: 235 RSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGVDYIDAPTPYMMGLHSDV------ 288
Query: 360 GPRSIALCSEAALCLVDIDKPDIQLPEELPIFP 392
++A+ + +VD+D I EE+P P
Sbjct: 289 DTSNLAM---DGVVVVDLDINQITTSEEIPQIP 318
>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain; this
cDNA may contain an anomalously spliced intron...will
require further examination.
Length = 765
Score = 54.4 bits (125), Expect = 5e-07
Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 17/237 (7%)
Query: 126 LQAMYITELS----SGQTPPGHRKSS--GKESSRSLPRSFKLTPHTGAALTYFDIAKDKL 179
L+ Y+ E+S S Q P R+ S + + + SF T + + AK K
Sbjct: 399 LRCPYLDEISDSSTSFQAAPCERRHSRTSADDTETDEASFSGQDDTSSNFDILEWAKSKK 458
Query: 180 YVAKSIALICQYPFVRVAQMFLENLFRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQALR 239
S+ ++C+Y ++ F L L P Y + EV + PG A+
Sbjct: 459 N--GSLQILCEYYQLKCPARGSTITFHPLEH-----LHPVEY--HRPNEVALHTPGSAID 509
Query: 240 LYVPPPQPHLEAIPVVIRMPNPPEELPLLDYSLRVMFSNLGVELVVQLFTCVLLEHQVLL 299
L LE + E L +++ + +L ++ V+ + LLE Q++
Sbjct: 510 LR--SCSTSLELAEAHTTLMAEEEAAALSTWAVASLCGSLRLDNVLMILAGALLEKQIVF 567
Query: 300 RSTDYNKLMLVSECMVSLLLPFTWAHVYVPILPAPLYHFLDAPVPFVMGLHTDSAAV 356
++ L ++ ++ PF W + +P+LP + FLDAPVP+++G+ ++ V
Sbjct: 568 VCSNLGILAASVLSIIPVIRPFRWQSLLMPVLPDDMLEFLDAPVPYIVGVKNKTSEV 624
Score = 33.5 bits (73), Expect = 0.91
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 572 KASFLSDQPQRHRPFLSRFLETQMFATLID 601
K SF+ P R RPF+ F++TQ+F+ D
Sbjct: 727 KESFIDSFPSRQRPFMKLFVDTQLFSVHTD 756
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 41.9 bits (94), Expect = 0.003
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 314 MVSLLLPFTWAHVYVPILPAPLYHFLDAPVPFVM 347
+V ++ PF W + +P+LP ++ FL+APVPF++
Sbjct: 829 LVPMIRPFQWQSLLLPVLPGRMFDFLEAPVPFLV 862
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 35.5 bits (78), Expect = 0.23
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 209 PRQPGPGLSPESYVYNLLYEVPVPLPGQALRLYVPPPQPHLEAIPVVIRMPNPPEELP 266
P+ P P SP S +Y+ P P+ +Y PP PH+ + P + P PP P
Sbjct: 536 PQPPMPSPSPPSPIYS----PPPPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPP 589
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 32.3 bits (70), Expect = 2.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 230 PVPLPGQALRLYVPPPQPHLEAIPVVIRMPNPPEELPLLD 269
P P P R +PPP P V+ R P PP LP+ D
Sbjct: 42 PPPPPPMRRRAPLPPPPPPAMRRRVLPRPPPPPPPLPMFD 81
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 32.3 bits (70), Expect = 2.1
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 204 LFRSLPRQPGPGLSPESYVYNLLYEVPVPLPGQ----ALRLYVPPPQPHLEAIPVVIRMP 259
++ S P P +SP Y+ P P P ++R Y PPP P+ + P V P
Sbjct: 403 VYSSPPPPPSSKMSPTVRAYS-----PPPPPSSKMSPSVRAYSPPPPPYSKMSPSVRAYP 457
Query: 260 NPPEELP 266
PP P
Sbjct: 458 PPPPPSP 464
>At3g23560.1 68416.m02964 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 477
Score = 31.1 bits (67), Expect = 4.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 888 EEEREQFLYHL-LTLNAVDYYCFTNTYPTTKLPYRVLIMPSRKASQTTANCWISISG 943
EE + Q +Y L + L V YYC P T + + + A T AN W ++SG
Sbjct: 38 EEAKAQMIYSLPMILTNVFYYCI----PITSVMFASHLGQLELAGATLANSWATVSG 90
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 31.1 bits (67), Expect = 4.9
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 209 PRQPGPGLSPESYVYNLLYEVPVPLPGQALRLYVPPPQPHL---EAIPVVIRMPNPPEEL 265
P P P P YVY P P P +Y PPP P++ P + P PP
Sbjct: 396 PPPPPPPPPPPPYVYP---SPPPPPPSPPPYVYPPPPPPYVYPPPPSPPYVYPPPPPSPQ 452
Query: 266 PLL 268
P +
Sbjct: 453 PYM 455
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 31.1 bits (67), Expect = 4.9
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 209 PRQPGPGLSPESY-VYNLLYEVPVPLPGQALRLYVPPPQPHLEAIPVVIRMPNPPEELP 266
P P P SP VY+ PV P +Y PPP P + + P + P PP P
Sbjct: 501 PPPPSPIHSPPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSP 559
>At2g19400.1 68415.m02263 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 527
Score = 30.7 bits (66), Expect = 6.4
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 691 KMGTEESNLGFGSEVSITGVEESTMIASLCDLLERLWSHGLQHKMGKSALWMHLINYQEL 750
K+ + ++L F +T + LCD RL SHG + K+ W + +++L
Sbjct: 363 KIVSWRTHLVFPEGARLTPEARDLICRLLCDSEHRLGSHGAGAEQIKAHTWFKDVEWEKL 422
Query: 751 EQCSNSTKPI 760
+ + KP+
Sbjct: 423 YEMDAAFKPV 432
>At5g65080.1 68418.m08186 MADS-box family protein
Length = 205
Score = 30.3 bits (65), Expect = 8.5
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 1077 KRDKDANSLSVLLCGE-NGLV-KCLEQAFLCGFKSARFF----GK--NFFIWDYFARVKD 1128
KR ++ +S V C NGL+ K + + LCG A F GK N D A++
Sbjct: 16 KRIENKSSRQVTFCKRRNGLMEKARQLSILCGSSVALFIVSSTGKLYNSSSGDSMAKIIS 75
Query: 1129 EFKMSLCDEPSTMN 1142
FK+ D+P T++
Sbjct: 76 RFKIQQADDPETLD 89
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,513,171
Number of Sequences: 28952
Number of extensions: 1284426
Number of successful extensions: 3155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3118
Number of HSP's gapped (non-prelim): 40
length of query: 1253
length of database: 12,070,560
effective HSP length: 90
effective length of query: 1163
effective length of database: 9,464,880
effective search space: 11007655440
effective search space used: 11007655440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)
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