GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000973-TA|BGIBMGA000973-PA|IPR000719|Protein kinase,
IPR000980|SH2 motif, IPR001245|Tyrosine protein kinase
         (159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    28   0.57 
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   1.7  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   5.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   9.3  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    24   9.3  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    24   9.3  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 3   RQRAESLL--KREDKEGNHQQTKHYHIKQNSRGEFYLSDKHCC--ASIPEL-INYHKHNS 57
           R+ A++L+  + ++K+G H+Q+   H +Q SR    LS K       + E  ++  KH  
Sbjct: 116 REAAKNLMVAQAKEKKGKHKQSTIEHYEQCSRRVRELSSKIWLIERKLAEFYMHLLKHMV 175

Query: 58  GGLCSRLKATPCDRPAPPTAGLSHDK 83
               + LK   C + + P + ++ D+
Sbjct: 176 AVCIAELKPGSCSKVSSPVSAITADE 201


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 65  KATPCDRPAPPTAGLSHDKWEIDPSELVLMEVLGA 99
           K T C R      G S  +W++DP E++L  +L A
Sbjct: 360 KCTFCWRHGTNPVGTSW-RWKVDPPEMILQGILKA 393


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 3   RQRAESLLKREDKEGNHQQTKHYHIKQNSR 32
           R R  +    + +E NH++  H+H K  +R
Sbjct: 599 RTRDSNPSNTDSRESNHKKYNHFHQKSQTR 628


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 47  PELI-NYHKHNSGGLCSRLKATPCDRPAP 74
           PE + N   H+ G  C + +   C+ P P
Sbjct: 267 PEFVKNLVPHSCGDPCGKTRGQDCEHPCP 295


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 8   SLLKREDKEGNHQQTKHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLKAT 67
           + +KR+    N        +  +   +F+    H   + P  I  + +NS     R+KA+
Sbjct: 197 NFVKRDIDSSNFSNLDASALPISPPSDFFSVHSHNLPNAPPSIPANSNNSASPNQRIKAS 256

Query: 68  PCDRPAPPTAGLSHDKWEIDPS 89
           P         GL  D    +PS
Sbjct: 257 P-KHADTDVLGLDFDMTPSEPS 277


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 62 SRLKATPCDRPAPPTAGLS 80
          S+ K TP ++  PPT GLS
Sbjct: 56 SKKKKTPQEQTNPPTVGLS 74


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,407
Number of Sequences: 5004
Number of extensions: 25268
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 6
length of query: 159
length of database: 2,362,478
effective HSP length: 68
effective length of query: 91
effective length of database: 2,022,206
effective search space: 184020746
effective search space used: 184020746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)