Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000973-TA|BGIBMGA000973-PA|IPR000719|Protein kinase,
IPR000980|SH2 motif, IPR001245|Tyrosine protein kinase
(159 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38378| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 102 2e-22
SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 2e-16
SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 1e-15
SB_33662| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 2e-12
SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 4e-12
SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 49 2e-06
SB_6049| Best HMM Match : SH2 (HMM E-Value=8.4e-30) 43 1e-04
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_34104| Best HMM Match : SH2 (HMM E-Value=1.6e-24) 33 0.14
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32) 32 0.25
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 30 0.77
SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 1.4
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_11943| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 3.1
SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 3.1
SB_51792| Best HMM Match : SH2 (HMM E-Value=6.3e-24) 28 4.1
SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26) 28 4.1
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05) 28 4.1
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_9949| Best HMM Match : PetM (HMM E-Value=2.2) 27 7.2
SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27) 27 9.5
SB_36782| Best HMM Match : Pkinase (HMM E-Value=1.4e-32) 27 9.5
SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4) 27 9.5
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19) 27 9.5
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43) 27 9.5
SB_33962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_12278| Best HMM Match : PAN (HMM E-Value=0.044) 27 9.5
SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2) 27 9.5
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_38378| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 478
Score = 102 bits (244), Expect = 2e-22
Identities = 59/127 (46%), Positives = 71/127 (55%), Gaps = 23/127 (18%)
Query: 35 FYLSDKHCCASIPELINYHKHNSGGLCSRLKATPCDRPAPPTAGLSH------------- 81
+Y+SD+H S+P+LI+YHKHNSGGL +RL+ P P TAG H
Sbjct: 135 YYISDRHRFDSVPKLIHYHKHNSGGLVTRLRQPPSFGQKPSTAGFGHASPSKAFVVFLYA 194
Query: 82 ----------DKWEIDPSELVLMEVLGAGQFXXXXXXXXXXXIDTAVKMMKEGTMSEDDF 131
DKWE+D SEL L LGAGQF I AVKMMK+G MSE+DF
Sbjct: 195 VYDAFPLNIPDKWEMDRSELTLGRELGAGQFGCVREGMWRGTIPVAVKMMKDGAMSEEDF 254
Query: 132 IDEAKVM 138
I+EAKVM
Sbjct: 255 IEEAKVM 261
>SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 81.8 bits (193), Expect = 2e-16
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 23 KHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLKATPCDR-PAPPTAGLSH 81
KHY I+++ G F++S + S+ +L+ ++K ++ GLC LK PC + P T GLS+
Sbjct: 181 KHYRIRKSDTGGFFISHNNVFTSLKDLVAHYKESADGLCDLLK-KPCQKTEKPQTVGLSY 239
Query: 82 ---DKWEIDPSELVLMEVLGAGQFXXXXXXXXXXXIDTAVKMMKEGTMSEDDFIDEAKVM 138
D+WE+ L L + LGAG F AVK +K GTM D F+ EA++M
Sbjct: 240 NTADQWEVARDSLQLQKRLGAGNFGEVWQGVWNDTTPVAVKTLKPGTMRPDAFLAEAELM 299
Query: 139 TSVYY 143
+ +
Sbjct: 300 KKLIH 304
>SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 79.4 bits (187), Expect = 1e-15
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 23 KHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLKATPCDRPAPPTAGLSH- 81
KHY I++ G FY++ + S+ EL++++ ++ GLC L C P TAGLS+
Sbjct: 189 KHYRIRKLDTGGFYITTRAPFGSLTELVDHYMQDADGLCCMLTQA-CSGEKPQTAGLSYG 247
Query: 82 --DKWEIDPSELVLMEVLGAGQFXXXXXXXXXXXIDTAVKMMKEGTMSEDDFIDEAKVMT 139
D WEI L L + LG GQF A+K ++ GTMS F+ EA++M
Sbjct: 248 TKDAWEIPRESLQLQKKLGQGQFGEVWSGLWNSTTPVAIKTLRRGTMSPQAFLAEAQIMK 307
Query: 140 SVYYLSI 146
+ + ++
Sbjct: 308 KLRHANL 314
>SB_33662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 68.5 bits (160), Expect = 2e-12
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 23 KHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLKATPCDRPAPPT----AG 78
KHY I+ G FY++ + A++ +L+ ++ + GL SRLK PC PT A
Sbjct: 173 KHYRIRCLDNGGFYIAHRAQFATLIDLVEHYNKDCDGLVSRLKK-PCPAIELPTISDLAF 231
Query: 79 LSHDKWEIDPSELVLMEVLGAGQFXXXXXXXXXXXIDTAVKMMKEGTMSEDDFIDEAKVM 138
D+WEI + ++ LG GQF AVKM++ GTMS F+ EA++M
Sbjct: 232 NMKDQWEIPRESVRILSKLGQGQFGEVWEGLWNNTTPVAVKMLRPGTMSASAFLAEAQIM 291
>SB_16900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 67.7 bits (158), Expect = 4e-12
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 20 QQTKHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLKATPCDRPAPPTAGL 79
++ HY + + ++Y+S + ++I EL+++H N+ GL + L P G
Sbjct: 145 ERVYHYRVSTSVDNKYYVSSDNRFSTIAELVHHHSVNADGLVTTLHYPAAKTQEPTVYGF 204
Query: 80 S--HDKWEIDPSELVLMEVLGAGQFXXXXXXXXXXXIDT-AVKMMKEGTMSEDDFIDEAK 136
S D+WEI+ +E+ + LG GQ+ T AVK ++E TM ++F+ EA
Sbjct: 205 SPEPDEWEIERTEIAMKHKLGGGQYGEVYEGTWKKYNKTVAVKTLREETMEVEEFLKEAS 264
Query: 137 VMTSVYYLSIHINKIGV 153
VM + + ++ + +GV
Sbjct: 265 VMKGIKHQNL-VQLLGV 280
>SB_40820| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 526
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/115 (24%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 45 SIPELINYHKHNSGGLCSRLKATPCDRPAPPTAGLSHDK-----WEIDPSELVLMEVLGA 99
++ +L+ +++++S GLC+RL+ P + + + W I SEL++ E +G
Sbjct: 269 NLTKLVEHYQNDSDGLCTRLRQ-PVKKSGRYNYSVDSESFVKEGWSIQKSELIIKETIGK 327
Query: 100 GQFXXXXXXXXXXXIDTAVKMMKEGTMSEDDFIDEAKVMTSVYYLSIHINKIGVS 154
G+F A+K +K+ T + F+ EA +MT + ++ I++ G +
Sbjct: 328 GEFGDVLLGTYRGK-QVALKCLKDDTRAAQQFLAEASIMTDLAARNVLIHEDGTA 381
>SB_6049| Best HMM Match : SH2 (HMM E-Value=8.4e-30)
Length = 94
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 23 KHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLKATPCDR 71
KHY I+++ G F++S + S+ +L+ ++K ++ GLC LK PC +
Sbjct: 47 KHYRIRKSDTGGFFISHNNVFTSLKDLVAHYKESADGLCDLLK-KPCQK 94
>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 33.1 bits (72), Expect = 0.11
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 51 NYHKHNSGGLCSRLKATPCDRPAPPTAGLSHDKWEIDPSELVLMEVLGAGQFXXXXXXXX 110
+Y S G+ SRL ++ + D WEID S++ + E LG G F
Sbjct: 691 SYRSRFSSGVSSRLDSSSVITEDFYELPIDED-WEIDRSQITIKEQLGEGAFGLVMKAEA 749
Query: 111 XXXID------TAVKMMK-EGTMSE-DDFIDEAKVMTSVYYLSIHINKIG 152
D AVKM+K + T +E D + E M ++ IN IG
Sbjct: 750 LGLTDMPYRHTVAVKMLKADATENELADLLSEMDTMKNIGSHKNIINLIG 799
>SB_34104| Best HMM Match : SH2 (HMM E-Value=1.6e-24)
Length = 421
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 18 NHQQTKHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLKATPCDR 71
N+ + HY I +++ G+ + D EL+ +H+ + GL SRL PC R
Sbjct: 52 NNHKVIHYQILRHADGKVGIEDGPRFPGPVELVQHHQQHLDGLLSRL-TIPCSR 104
>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
Length = 773
Score = 31.9 bits (69), Expect = 0.25
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 75 PTAGLSHDKWEIDPSELVLMEVLGAGQFXXXXXXX----XXXXIDTAVKMMKEGTMSED- 129
P L + E+D L L +V+G G+F I A+K +K+G+ S++
Sbjct: 458 PEEALRNFAKELDKRWLKLEKVIGGGEFGDVYKGTLKRPGENTIPVAIKTLKQGSTSKNR 517
Query: 130 -DFIDEAKVM 138
DF+ EA VM
Sbjct: 518 GDFLSEASVM 527
>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1038
Score = 30.3 bits (65), Expect = 0.77
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 15/137 (10%)
Query: 23 KHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLKA---TPCDRPAPPTAGL 79
+H+ I+ G F ++ I EL+ YH + + + A TP RP
Sbjct: 451 RHFIIQTMEDG-FVRFEEQAFPCIRELLKYHITHHIPVTKKSNAMISTPVQRPPK----- 504
Query: 80 SHDKWEIDPSELVLMEVLGAGQFXXXXXXXXX-XXIDTAVKMMKE--GTMSEDDFIDEAK 136
DKWEI S + + LG G F + AVK KE + + F+ EA+
Sbjct: 505 --DKWEISHSIVEIESKLGHGHFGDVMRGYLKPSHLPVAVKSCKEDVSEVVKKKFLAEAE 562
Query: 137 VMTSVYYLSIHINKIGV 153
++ + +I + IGV
Sbjct: 563 ILKQYDHPNI-VRLIGV 578
>SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 456
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 86 IDPSELVLMEVLGAGQFXXXX----XXXXXXXIDTAVKMMKEGTMSED---DFIDEAKVM 138
I S ++L E LG+G+F +D AVK +K G SE+ D + E ++M
Sbjct: 79 IPTSNIILHEYLGSGEFGVVTRGEMTTDDGRTVDCAVKSIK-GFASEEALRDLVQELELM 137
Query: 139 TSVYYLSIHINKIG 152
SV + +N IG
Sbjct: 138 HSVGHHRNLLNLIG 151
>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 79 LSHDKWEIDPSELVLMEVLGAGQFXXXXXXXXXXXID------TAVKMMKEGTMSEDDFI 132
L D+WEI +VL LG G F D AVK +K G+ E+ +
Sbjct: 1560 LQLDQWEILRENVVLNRKLGEGAFGTVFGGEAKGIRDHMEWVPVAVKTLKVGSSPEEKVV 1619
Query: 133 DEAKVMTSVY 142
D+ + + Y
Sbjct: 1620 DQFQAVPRFY 1629
>SB_11943| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 591
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 82 DKWEIDPSELVLMEVLGAGQF 102
D+WE+D S + EV+G+G F
Sbjct: 173 DEWEVDYSSIAFGEVVGSGAF 193
>SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 869
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 82 DKWEIDPSELVLMEVLGAGQF 102
++WE D + LV+ EVLG G F
Sbjct: 351 EEWEFDRTYLVIREVLGEGAF 371
>SB_51792| Best HMM Match : SH2 (HMM E-Value=6.3e-24)
Length = 189
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 26 HIKQNSRGEFY--LSDKHCCASIPELINYHKHNSGGLCSRLKATPCDRPAPPTAGLSH 81
H + RG+ Y + D + L++Y++ N+ GL RL C PP++ H
Sbjct: 57 HFQIQCRGDIYFCIDDGPIFHGLDSLVDYYRENADGLPIRLTQF-CPGIPPPSSTCKH 113
>SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 82 DKWEIDPSELVLMEVLGAGQFXXXXXXXXX------XXIDTAVKMMKEGTMSED--DFID 133
+ WE+ P L +++ LG+G F + AVK +K +D DF+
Sbjct: 291 EAWEVPPQNLSVIKRLGSGNFGHVDKAMAIGIPGFPGQVTVAVKTLKSIAQEKDKIDFLT 350
Query: 134 EAKVMTSV 141
E +M S+
Sbjct: 351 ELNLMKSL 358
>SB_6334| Best HMM Match : zf-C2H2 (HMM E-Value=1.5e-26)
Length = 611
Score = 27.9 bits (59), Expect = 4.1
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 4 QRAESLLKREDKEGNHQQTKHYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGL--- 60
++A+S ++K N + + N L+D C +I + H SG +
Sbjct: 358 KKADSEKSEDEKTTNSEDQRSEEESNNVCVSESLADSKCVVAIGQTNGCHIITSGIIKSK 417
Query: 61 -CSRLKATPCDRPAPPTAGLSH 81
SRL +TP RP P + H
Sbjct: 418 AISRLYSTPGTRPPPYKSSKEH 439
>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
Length = 397
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 24 HYHIKQNSRGEFYLSDKHCCASIPELINYHKHNSGGLCSRLK-ATPCDRPAP 74
H H+ + S FY+ D ++P +I+++ ++ GL L+ A P D P
Sbjct: 99 HGHLDRKSDRWFYIDDGPLFETLPHVIDHYSKSADGLPVLLQFAVPPDGRTP 150
>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 82 DKWEIDPSELVLMEVLGAGQF 102
++WE+D S++ L+ +LG G F
Sbjct: 491 EEWELDRSQISLLGILGEGAF 511
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 68 PCDRPAPPTAGLSHDKWEIDPSELVLMEVLGAGQ 101
P D PP L DK ++D L LM LG G+
Sbjct: 272 PNDTALPPVPTLPVDKAKMDSEYLSLMAELGVGE 305
>SB_46601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 880
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 1 MSRQRAESLLKREDKEGNHQQTKHYHIKQNSRGEFYLSDKHCCASIP-ELINYHKHNSGG 59
++ Q +LK D Y K+N+R + S +HC + P E+ N+ +N
Sbjct: 90 LTEQCLRDVLKAHDALAALPMYTTYCTKRNNRDKLGNSIEHCLMNNPLEIFNFDVNNLVN 149
Query: 60 LCSRLKATPCD 70
+ +L A D
Sbjct: 150 ITQKLDAVAND 160
>SB_9949| Best HMM Match : PetM (HMM E-Value=2.2)
Length = 299
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 1 MSRQRAESLLKREDKEGNHQQTKHYHIKQNSRGEFYLSDKHCCASIP-ELINYHKHNSGG 59
++ Q +LK D Y K+N+R + S +HC + P E+ N+ +N
Sbjct: 90 LTEQCLRDVLKAHDALAALPMYTTYCTKRNNRDKLGNSIEHCLMNNPLEIFNFDVNNLVN 149
Query: 60 LCSRLKATPCD 70
+ +L A D
Sbjct: 150 ITQKLDAVAND 160
>SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)
Length = 955
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 84 WEIDPSELVLMEVLGAGQF 102
WE L+L EVLG+G F
Sbjct: 827 WEFPEKRLILQEVLGSGAF 845
>SB_36782| Best HMM Match : Pkinase (HMM E-Value=1.4e-32)
Length = 310
Score = 26.6 bits (56), Expect = 9.5
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 76 TAGLSHDKWEIDPSELVLMEVLGAGQFXXXXXXXXXXXIDTAVKMMKEGTMSEDDFIDEA 135
T G +W + E+ + +VLG+G+F + AVKM++ +E+ ++
Sbjct: 1 TRGSLMSEWVVPFEEIEIFDVLGSGRFGKVYRGRWHG--EVAVKMIEIDNPTEEQ-LNAF 57
Query: 136 KVMTSVYYLSIHINKI 151
K S + + H N +
Sbjct: 58 KFQVSTFRKTRHDNTV 73
>SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)
Length = 576
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 18 NHQQTKHYHIKQNSRGEF-YLSDKHCCASIPELINYHKHN--SGGLCSRLKATPCDRPAP 74
NH++ K + + + Y H C + E++N HK N +C + + C P
Sbjct: 142 NHRKVKSHPDGRGKTDRWSYCQRYHRCTACGEVLNMHKGNPDKPHVCGEDQCSICKERVP 201
Query: 75 P 75
P
Sbjct: 202 P 202
>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
Length = 493
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 4 QRAESLLKREDKEGNHQQT--KHYHIKQNSRGEFYLS 38
+R E + KR+ + GNHQ +H+ +Q R +Y S
Sbjct: 155 KREEDMRKRKSEVGNHQHRHFEHFCHRQQYRHNYYNS 191
>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
Length = 1806
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 47 PELINYHKHNSGGLCSRLKATPCDRPAPPTAGLSHDKWEIDPSELV 92
PE+ N + S G + ++ P P G S D + +DPS ++
Sbjct: 1603 PEVSNQNVQESNGRQTHHRSVPERVPQDNLTGTSLDSYLLDPSNII 1648
>SB_33962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 84 WEIDPSELVLMEVLGAGQF 102
WE L+L EVLG+G F
Sbjct: 303 WEFPEKRLILQEVLGSGAF 321
>SB_12278| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 97
Score = 26.6 bits (56), Expect = 9.5
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 12 REDKEGNHQQTKHYHIKQNSRGEFY------LSDKHCCASIPELINYHKHNSGGLCSRLK 65
R G+H HY + GE + DK CASI NY N G C R+K
Sbjct: 20 RNSMFGHHLLASHYD--ETDVGELWECYKLCYDDKENCASI----NYDMKN--GRCKRMK 71
Query: 66 ATPCDRP 72
AT + P
Sbjct: 72 ATHANLP 78
>SB_9080| Best HMM Match : zf-CXXC (HMM E-Value=2)
Length = 390
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 18 NHQQTKHYHIKQNSRGEF-YLSDKHCCASIPELINYHKHN--SGGLCSRLKATPCDRPAP 74
NH++ K + + + Y H C + E++N HK N +C + + C P
Sbjct: 66 NHRKVKSHPDSRGKTVRWSYCQRYHQCTACGEVLNMHKANPDKPHVCEEDQCSICKERVP 125
Query: 75 P 75
P
Sbjct: 126 P 126
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 7 ESLLKREDKE-GNHQQTKHYHIKQNSRGE 34
+S LKR KE G H Q H H + N + E
Sbjct: 1001 KSKLKRISKEDGKHSQMSHRHKENNGKSE 1029
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,160,328
Number of Sequences: 59808
Number of extensions: 194724
Number of successful extensions: 459
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 33
length of query: 159
length of database: 16,821,457
effective HSP length: 77
effective length of query: 82
effective length of database: 12,216,241
effective search space: 1001731762
effective search space used: 1001731762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -