Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000972-TA|BGIBMGA000972-PA|IPR001452|Src homology-3
         (72 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   0.42 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    19   3.9  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    19   5.2  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    19   5.2  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 0.42
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 48  EVIDDSQDHWWKVKDEN 64
           E I+D  DH WK  D +
Sbjct: 219 EEIEDEPDHKWKKNDSS 235


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 19.4 bits (38), Expect = 3.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 13  SAKPKEKPRTKIVVALYPFKA 33
           + KP  KP  K VV   P +A
Sbjct: 178 TTKPSTKPTNKPVVVTKPPQA 198


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
          acetylcholinesterase protein.
          Length = 50

 Score = 19.0 bits (37), Expect = 5.2
 Identities = 5/14 (35%), Positives = 11/14 (78%)

Query: 16 PKEKPRTKIVVALY 29
          P+E+P+  ++V +Y
Sbjct: 34 PQERPKVPVLVWIY 47


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 19.0 bits (37), Expect = 5.2
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 49  VIDDSQDHWWKVKDEN--GYGD 68
           V DD Q   +K KD+   GY D
Sbjct: 309 VFDDQQKVPYKYKDDQWIGYDD 330


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.136    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084
Number of Sequences: 317
Number of extensions: 488
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 72
length of database: 114,650
effective HSP length: 45
effective length of query: 27
effective length of database: 100,385
effective search space:  2710395
effective search space used:  2710395
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)
S2: 35 (18.2 bits)