Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000972-TA|BGIBMGA000972-PA|IPR001452|Src homology-3
(72 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0326 + 33150599-33150907,33151013-33151104,33151961-331520... 27 1.8
06_03_1231 + 28580006-28580934,28581810-28582086 27 2.4
03_02_0413 - 8224494-8224553,8224838-8225004,8225666-8225771,822... 26 4.3
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 25 5.6
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 25 7.5
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 25 9.9
07_01_0608 + 4515709-4515951,4516085-4516678 25 9.9
05_04_0326 + 20294334-20295007,20295210-20295291,20295391-202955... 25 9.9
>03_06_0326 +
33150599-33150907,33151013-33151104,33151961-33152057,
33152585-33152656,33152750-33152812,33152905-33153045,
33153603-33153698,33154120-33154404,33154692-33154851,
33154947-33155089,33155688-33155861,33156386-33156652,
33156737-33156856
Length = 672
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 27 ALYPFKAIESGDLSLEKGAEYEVIDDSQDHWWKVK 61
A+ A+E GD GAE + DSQ +WW K
Sbjct: 519 AMKAMGAMEEGDAVFGSGAEVNL--DSQVYWWHDK 551
>06_03_1231 + 28580006-28580934,28581810-28582086
Length = 401
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 34 IESGDLSLEKGAEYEVIDDSQDHWWKVKDENGY 66
IE GD E G EYEV + HWW G+
Sbjct: 205 IEYGDD--ETGEEYEVFRRVRRHWWSFMFFRGF 235
>03_02_0413 -
8224494-8224553,8224838-8225004,8225666-8225771,
8226068-8226105,8226177-8226264,8226688-8226741,
8226810-8226918,8227280-8227362,8227444-8227506,
8227585-8227647,8227906-8227977,8228056-8228094,
8228182-8228237,8228316-8228375,8228444-8228558,
8228590-8228810,8228978-8229259,8229390-8229504
Length = 596
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 14 AKPKEKPRTKIVVALYPFKAIESGDLSLEKGAEYEV 49
++ K K V+A ++ +SGDL + KG +Y+V
Sbjct: 286 SRRKASNLAKRVIACLDVRSNDSGDLVVTKGDQYDV 321
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 27 ALYPFKAIESGDLSLEKGAEYEVIDDSQDHWWKVK 61
ALY F A +LSL G + E I+ D W+ VK
Sbjct: 1089 ALYDFTAGGDDELSLTAGEDVE-IEYEVDGWYYVK 1122
>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 11 TPSAKPKEKPRTKIVVALYPFKAIESGDLSLEKGAEYEVIDDSQDHWWKV 60
TP++ +E+P+ +AL P+ A + V DD + W +
Sbjct: 1351 TPTSAEEEQPQCSTPIALSPWDETSDYQGEAVDSALWGVQDDQNNEMWSL 1400
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 32 KAIESGDLSLEKGAEYEVIDDSQDHWWKVKDE 63
KA+ S D + E + + D WK+KDE
Sbjct: 197 KAVVSHDSNANSSDLQEKLKEQSDTLWKLKDE 228
>07_01_0608 + 4515709-4515951,4516085-4516678
Length = 278
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 12 PSAKPKEKPRTKIVVALYPFK 32
P+AKPK P+ K A P K
Sbjct: 203 PAAKPKASPKAKAKTATSPVK 223
>05_04_0326 +
20294334-20295007,20295210-20295291,20295391-20295502,
20295602-20295723
Length = 329
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 41 LEKGAEYEVIDDSQDHWWKVKDENGYG 67
LE +Y+++ + +D W DE+G+G
Sbjct: 124 LELLTKYQLVVEEEDPNWPEDDEDGHG 150
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.136 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,498
Number of Sequences: 37544
Number of extensions: 68348
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 8
length of query: 72
length of database: 14,793,348
effective HSP length: 52
effective length of query: 20
effective length of database: 12,841,060
effective search space: 256821200
effective search space used: 256821200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)
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