GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000971-TA|BGIBMGA000971-PA|IPR008012|Proteasome
maturation factor UMP1
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa...    50   1e-07
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   3.4  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   3.4  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   3.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   4.5  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   4.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   5.9  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    24   7.8  

>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 129

 Score = 50.0 bits (114), Expect = 1e-07
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 47  HPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGR-LPFLPSSNLQHDV 105
           HPLE+  KN+   ++++ L  +R + GLH P++  ME+K AS+  R L    S+N   D+
Sbjct: 36  HPLESRLKNWEAQQQQIRLDSMRRIYGLHEPVRREMEQKLASQSSRPLALGGSANFHLDI 95

Query: 106 LTGRYIDIGFEDI 118
           L  R   +   DI
Sbjct: 96  LANREAVLDETDI 108


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 54 KNYH-LNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFL 96
          KN H L    +  ++L+ V  L A   + + R  A K+G  PFL
Sbjct: 14 KNEHFLKYSAIFYSLLKPVVALFACQCLVLIRPLARKIGSFPFL 57


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 24  NTFGIRDPMIAGLGATRPKLGFVHPLEAS 52
           +T GI +  IAGL    P  GFV P  A+
Sbjct: 329 STIGICEGAIAGLVGITPACGFVFPWGAA 357


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 58  LNEEKLNLAMLRNVQGLHAPMKITMERKFASK 89
           + E KL   +LRNV+G+ A ++  ++ +F ++
Sbjct: 140 IREMKLENGLLRNVEGIQAQLRRLIKCQFVAE 171


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 79  KITMERKFASKVGRLPFLPSSNLQHDVLTGRY 110
           + + ER+F  K+  L   P  NL   + TG Y
Sbjct: 876 RFSSERRFRDKIDDLVEFPIDNLDMSMRTGSY 907


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 2  SFGLPPLKVKPEHDDNGVKIQENTFGIRDPMIAGLGAT 39
          +F LP LK   +H+D   +     FG+   +   L A+
Sbjct: 27 NFSLPYLKFDCDHNDKNYRASNRPFGLSTGLSVQLNAS 64


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 96  LPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLGLL 142
           L  +N Q D+     +   F+    + D  +T    HA++++S+G L
Sbjct: 805 LKKNNSQKDIHRNPLLSHVFDTNTKSFDTLKTLNYKHAILKKSMGEL 851


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 24  NTFGIRDPMIAGLGATRPKLGFVHP 48
           +T G    ++AGL A  P  GFV P
Sbjct: 299 STIGFCSGVVAGLVAATPCAGFVSP 323


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,804
Number of Sequences: 5004
Number of extensions: 25581
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 8
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)