Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000971-TA|BGIBMGA000971-PA|IPR008012|Proteasome
maturation factor UMP1
(142 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1097 - 34095179-34095222,34095410-34095507,34096276-340963... 38 0.004
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 37 0.007
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 37 0.007
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 37 0.007
09_02_0402 + 8582235-8582360,8582452-8582552,8584328-8584425,858... 35 0.029
03_05_0152 + 21291162-21291287,21291379-21291479,21293257-212933... 35 0.029
01_06_0315 + 28416280-28416403,28416488-28416720,28417504-284178... 34 0.038
08_01_0047 - 328895-329404,329492-329821,330253-330626,330712-33... 33 0.066
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140... 31 0.35
05_03_0236 - 10761133-10761642,10761729-10762061,10762783-107630... 30 0.62
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 30 0.82
10_01_0157 - 1785738-1786247,1786334-1786666,1787248-1787624,178... 29 1.9
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 28 2.5
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 2.5
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147... 27 4.4
06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 27 5.8
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750... 27 5.8
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 27 7.6
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 27 7.6
>02_05_1097 -
34095179-34095222,34095410-34095507,34096276-34096376,
34096459-34096584
Length = 122
Score = 37.5 bits (83), Expect = 0.004
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 17 NGVKIQENTFGIRDPMIAGLG-ATRPKLGFVHPLEAS-EKNYHLNEEKLNLAMLRNVQGL 74
+G +++ G D + G+ + + L HPL+AS K+ +K + G
Sbjct: 3 SGGVVKKEIGGNHDVLRFGVNDSVKGDLAPPHPLQASVHKDAKFWADKKRFGA-EAIYGS 61
Query: 75 HAPMKITMERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILN 120
++ ++ + SK R P LPSS L ++ LTG D GFED LN
Sbjct: 62 AFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 47 HPLEAS-EKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLP-FLPSSNLQHD 104
HPL+AS K +K + G ++ ++ + SK R P LPSS L ++
Sbjct: 34 HPLQASVHKEAKFWADKKRFGA-EAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYE 92
Query: 105 VLTGRYIDIGFEDILN 120
LTG D GFED LN
Sbjct: 93 ALTGSLDDFGFEDYLN 108
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 47 HPLEAS-EKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLP-FLPSSNLQHD 104
HPL+AS K +K + G ++ ++ + SK R P LPSS L ++
Sbjct: 34 HPLQASVHKEAKFWADKKRFGA-EAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYE 92
Query: 105 VLTGRYIDIGFEDILN 120
LTG D GFED LN
Sbjct: 93 ALTGSLDDFGFEDYLN 108
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 36.7 bits (81), Expect = 0.007
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 47 HPLEAS-EKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLP-FLPSSNLQHD 104
HPL+AS K +K + G ++ ++ + SK R P LPSS L ++
Sbjct: 34 HPLQASVHKEAKFWADKKRFGA-EAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYE 92
Query: 105 VLTGRYIDIGFEDILN 120
LTG D GFED LN
Sbjct: 93 ALTGSLDDFGFEDYLN 108
>09_02_0402 +
8582235-8582360,8582452-8582552,8584328-8584425,
8585089-8585151,8586540-8586721,8586874-8587146
Length = 280
Score = 34.7 bits (76), Expect = 0.029
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 82 MERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILN 120
++ + SK R P LPSS L ++ LTG D GFED LN
Sbjct: 69 LDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
>03_05_0152 +
21291162-21291287,21291379-21291479,21293257-21293354,
21294016-21294068,21295465-21295659,21295812-21296084
Length = 281
Score = 34.7 bits (76), Expect = 0.029
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 82 MERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILN 120
++ + SK R P LPSS L ++ LTG D GFED LN
Sbjct: 69 LDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
>01_06_0315 +
28416280-28416403,28416488-28416720,28417504-28417818,
28417905-28418423
Length = 396
Score = 34.3 bits (75), Expect = 0.038
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 16 DNGVKIQENTFGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGL- 74
+NG+ + + F + D AG GA K GF+ P A YHL E N + L
Sbjct: 34 ENGIHVPQGKFYLVD---AGYGA---KQGFLPPFRAVR--YHLKEWGNNPVQNEELFNLR 85
Query: 75 HAPMKITMERKFASKVGRLPFL 96
H+ ++IT+ER F S R L
Sbjct: 86 HSSLRITVERAFGSLKRRFKVL 107
>08_01_0047 -
328895-329404,329492-329821,330253-330626,330712-330937,
331026-331475
Length = 629
Score = 33.5 bits (73), Expect = 0.066
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 14/85 (16%)
Query: 16 DNGVKIQENTFGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGL- 74
+NG++I + + + D AG GA K GF+ P A YHLNE N ++N + L
Sbjct: 218 ENGLRIPQGKYYLVD---AGYGA---KQGFLPPFRAVR--YHLNEWGNN--PVQNEKELF 267
Query: 75 ---HAPMKITMERKFASKVGRLPFL 96
H+ ++IT+ER F S R L
Sbjct: 268 NLRHSSLRITVERAFGSLKRRFKIL 292
>03_05_0284 -
22712390-22712899,22712978-22713304,22713742-22714091,
22714176-22714401,22714655-22714728,22715813-22716152
Length = 608
Score = 31.1 bits (67), Expect = 0.35
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 16 DNGVKIQENTFGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGL- 74
+NG+ + + F + D G GA K GF+ P ++ YHLNE N ++N + L
Sbjct: 206 ENGLHVPQGKFYLVD---VGYGA---KPGFLPPFRSTR--YHLNEWGNN--PVQNEKELF 255
Query: 75 ---HAPMKITMERKFASKVGRLPFL 96
H+ ++IT+ER F S R L
Sbjct: 256 NLRHSSLRITVERAFGSLKRRFKIL 280
>05_03_0236 -
10761133-10761642,10761729-10762061,10762783-10763018,
10763103-10763328,10763416-10763796
Length = 561
Score = 30.3 bits (65), Expect = 0.62
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 16 DNGVKIQENTFGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGL- 74
+NG+ + + F + D AG GA K GF+ P A YHL E N ++N + L
Sbjct: 195 ENGLHVPQGKFYLVD---AGYGA---KQGFLPPFRAVR--YHLKEWGNN--PVQNEKELF 244
Query: 75 ---HAPMKITMERKFASKVGRLPFL 96
H+ ++IT+ER F S R L
Sbjct: 245 NLRHSSLRITVERAFGSLKRRFKVL 269
>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 29.9 bits (64), Expect = 0.82
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 34 AGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRL 93
+G G+T P + VH + E LN + Q + F +K G L
Sbjct: 1235 SGKGSTDPLMVDVHSFDMIPAGEERENETLNEIAYNSEQAAIITEDVKYTESFLNKPGSL 1294
Query: 94 PFLPSSN 100
P+ P+ N
Sbjct: 1295 PYAPNDN 1301
>10_01_0157 -
1785738-1786247,1786334-1786666,1787248-1787624,
1787709-1787934,1788148-1788257,1788420-1788471
Length = 535
Score = 28.7 bits (61), Expect = 1.9
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 14/85 (16%)
Query: 16 DNGVKIQENTFGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGL- 74
+NG+ + + F + D G GA K GF+ P A YHL E N ++N + L
Sbjct: 122 ENGLHVPQGKFYLVD---GGYGA---KQGFLPPFRAVR--YHLKEWGNN--PVQNEKELF 171
Query: 75 ---HAPMKITMERKFASKVGRLPFL 96
H+ ++IT+ER F S R L
Sbjct: 172 NLRHSSLRITVERAFGSLKRRFKVL 196
>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 112 DIGFEDIL-NTRDLCETAGQPHAVIERSLG 140
++GF D N R L TAG HA +ER LG
Sbjct: 1227 EMGFFDTQENIRALIATAGNVHAAVERLLG 1256
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.3 bits (60), Expect = 2.5
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 84 RKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAV 134
R + +GRL L S NL + R + F D+L R+L + Q HA+
Sbjct: 343 RGLPAGIGRLAALESLNLSSNFSDMRDLPASFGDLLGLRELDLSNNQIHAL 393
>02_05_0839 -
32113992-32114210,32114321-32114484,32114612-32114708,
32115822-32115944,32116770-32117141
Length = 324
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 6 PPLKVKPEHDDNGVKIQENTFGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLN 64
PP++V PE + +G ++ FG P G + + P+E+++ + + E+ LN
Sbjct: 187 PPVEVIPEGEPDGATAEDPIFGTEVPATENHGVDQVQEDIDIPVESNDVD-PMQEDLLN 244
>06_03_0635 -
22971502-22973840,22974112-22974403,22974639-22975162,
22975314-22975583,22976393-22977124,22977226-22977310
Length = 1413
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 63 LNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSSNLQHDVLTGRYI 111
LNL +L + + + + +++ +F+ K G P LPS + L +YI
Sbjct: 327 LNLELLESNRSIGQYIAMSLNAEFSKKPGHAPVLPSGGIGKTTL-AQYI 374
>02_02_0179 +
7500647-7500779,7503021-7503222,7503356-7503427,
7503655-7503726,7504212-7504283,7504711-7504782,
7505045-7505116,7505209-7505280,7505688-7505759,
7506215-7506292,7506670-7506729,7506810-7506848,
7506949-7506998,7507110-7507480,7508467-7508662,
7508856-7508936,7509694-7509848,7510302-7510512,
7510648-7510882,7510995-7511145,7511813-7512181
Length = 944
Score = 27.1 bits (57), Expect = 5.8
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 58 LNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFED 117
L EE +NL L N+ + T+ ++ +GR+PFL S NL+ + L G +I F +
Sbjct: 123 LPEEVVNLTYLTNLSLQGNRISGTVPKE----LGRMPFLKSINLEGNQLEG-HIPPEFGN 177
Query: 118 ILN 120
I++
Sbjct: 178 IIS 180
>06_03_1333 -
29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 63 LNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSS-NLQHDVLTGRYIDIGF 115
LNL +L + + + + +++ +F+ K+G LPSS + V T +I+ F
Sbjct: 216 LNLELLESNRSIGQCIAMSLNSEFSGKMGHAVVLPSSIAMNRPVTTSDFIEPKF 269
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 52 SEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRL 93
+E+ +++ + LRN Q H MK+ ME+K + ++
Sbjct: 514 NERRISGRKQEFSYISLRNAQSAHGYMKLQMEQKSGVGINKI 555
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.139 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,170,141
Number of Sequences: 37544
Number of extensions: 156533
Number of successful extensions: 357
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 19
length of query: 142
length of database: 14,793,348
effective HSP length: 75
effective length of query: 67
effective length of database: 11,977,548
effective search space: 802495716
effective search space used: 802495716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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