GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000971-TA|BGIBMGA000971-PA|IPR008012|Proteasome
maturation factor UMP1
         (142 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29191| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   4e-13
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         31   0.48 
SB_4182| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_29191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 34/61 (55%), Positives = 43/61 (70%)

Query: 59  NEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDI 118
           N+E+L++ MLRN QGLHAP+K+ MER   SK+ RLP LPSS +  D + G    IGFED 
Sbjct: 9   NQERLDMKMLRNTQGLHAPLKLQMERAVTSKIRRLPCLPSSMVALDTVLGTDDVIGFEDY 68

Query: 119 L 119
           L
Sbjct: 69  L 69


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 49  LEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPS 98
           +EA +K+  LN+ K +   L   +  H+     +E++F  K+ ++   PS
Sbjct: 85  MEAFKKHLELNDIKCDWKELNTARAFHSSHMAPIEKEFKQKIAKMHLTPS 134


>SB_4182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 78  MKITMERKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIER 137
           ++I +E KF  +   LP +   N +H        D  FED+L T  + E A  PH    R
Sbjct: 91  IEIALEIKFRGQAIMLPSITVFNPRHRDYPQNCGD--FEDVLKTAAVREKACAPHIYRSR 148

Query: 138 SL 139
           +L
Sbjct: 149 TL 150


>SB_24575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 29  RDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFAS 88
           R P++ GLGA    + +++ ++   +       +L L +L + QG      IT   +   
Sbjct: 175 RSPLVFGLGALNKTISYLYNMKTIPRKCFETYSQLRLLLL-HYQG-RPLASITEVHQIQE 232

Query: 89  KVGRLPFLPSSNLQH-DVLTGRYIDI 113
           + G  P + S++ Q  D L    +++
Sbjct: 233 ETGACPSIASTDCQESDALVTTEVNV 258


>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1436

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 43  LGFV-HPLEASEKNYHLNEEKLNLAMLR 69
           LG+    L A+EKNYHL+  KL    L+
Sbjct: 797 LGYASRTLTAAEKNYHLHAGKLEFVALK 824


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,708,997
Number of Sequences: 59808
Number of extensions: 174637
Number of successful extensions: 304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 5
length of query: 142
length of database: 16,821,457
effective HSP length: 75
effective length of query: 67
effective length of database: 12,335,857
effective search space: 826502419
effective search space used: 826502419
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)