GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000971-TA|BGIBMGA000971-PA|IPR008012|Proteasome
maturation factor UMP1
         (142 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF535527-1|ABQ08566.1|  141|Homo sapiens voltage-gated potassium...   116   3e-26
BC014334-1|AAH14334.1|  141|Homo sapiens proteasome maturation p...   116   3e-26
BC003390-1|AAH03390.1|  141|Homo sapiens proteasome maturation p...   116   3e-26
AL359454-1|CAI17157.1|  141|Homo sapiens proteasome maturation p...   116   3e-26
AF262975-1|AAK58521.1|  141|Homo sapiens voltage-gated K channel...   116   3e-26
AF275807-1|AAG23819.1|  161|Homo sapiens PNAS-110 protein.            113   3e-25

>EF535527-1|ABQ08566.1|  141|Homo sapiens voltage-gated potassium
           channel beta subunit 4.1 protein.
          Length = 141

 Score =  116 bits (279), Expect = 3e-26
 Identities = 59/117 (50%), Positives = 74/117 (63%)

Query: 26  FGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERK 85
           F   D +  G    + +L   HPLE SEKN+ LN++K+N + LRN+QGL AP+K+ ME K
Sbjct: 25  FESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFK 84

Query: 86  FASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLGLL 142
              +V RLPFL SSNL  DVL G    IGFEDILN     E  G+PH ++E  LGLL
Sbjct: 85  AVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVMGEPHLMVEYKLGLL 141


>BC014334-1|AAH14334.1|  141|Homo sapiens proteasome maturation
           protein protein.
          Length = 141

 Score =  116 bits (279), Expect = 3e-26
 Identities = 59/117 (50%), Positives = 74/117 (63%)

Query: 26  FGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERK 85
           F   D +  G    + +L   HPLE SEKN+ LN++K+N + LRN+QGL AP+K+ ME K
Sbjct: 25  FESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFK 84

Query: 86  FASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLGLL 142
              +V RLPFL SSNL  DVL G    IGFEDILN     E  G+PH ++E  LGLL
Sbjct: 85  AVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVMGEPHLMVEYKLGLL 141


>BC003390-1|AAH03390.1|  141|Homo sapiens proteasome maturation
           protein protein.
          Length = 141

 Score =  116 bits (279), Expect = 3e-26
 Identities = 59/117 (50%), Positives = 74/117 (63%)

Query: 26  FGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERK 85
           F   D +  G    + +L   HPLE SEKN+ LN++K+N + LRN+QGL AP+K+ ME K
Sbjct: 25  FESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFK 84

Query: 86  FASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLGLL 142
              +V RLPFL SSNL  DVL G    IGFEDILN     E  G+PH ++E  LGLL
Sbjct: 85  AVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVMGEPHLMVEYKLGLL 141


>AL359454-1|CAI17157.1|  141|Homo sapiens proteasome maturation
           protein protein.
          Length = 141

 Score =  116 bits (279), Expect = 3e-26
 Identities = 59/117 (50%), Positives = 74/117 (63%)

Query: 26  FGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERK 85
           F   D +  G    + +L   HPLE SEKN+ LN++K+N + LRN+QGL AP+K+ ME K
Sbjct: 25  FESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFK 84

Query: 86  FASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLGLL 142
              +V RLPFL SSNL  DVL G    IGFEDILN     E  G+PH ++E  LGLL
Sbjct: 85  AVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVMGEPHLMVEYKLGLL 141


>AF262975-1|AAK58521.1|  141|Homo sapiens voltage-gated K channel
           beta subunit 4.1 protein.
          Length = 141

 Score =  116 bits (279), Expect = 3e-26
 Identities = 59/117 (50%), Positives = 74/117 (63%)

Query: 26  FGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERK 85
           F   D +  G    + +L   HPLE SEKN+ LN++K+N + LRN+QGL AP+K+ ME K
Sbjct: 25  FESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFK 84

Query: 86  FASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLGLL 142
              +V RLPFL SSNL  DVL G    IGFEDILN     E  G+PH ++E  LGLL
Sbjct: 85  AVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVMGEPHLMVEYKLGLL 141


>AF275807-1|AAG23819.1|  161|Homo sapiens PNAS-110 protein.
          Length = 161

 Score =  113 bits (271), Expect = 3e-25
 Identities = 57/115 (49%), Positives = 72/115 (62%)

Query: 26  FGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERK 85
           F   D +  G    + +L   HPLE SEKN+ LN++K+N + LRN+QGL AP+K+ ME K
Sbjct: 25  FESHDLLRKGFSCVKNELLPSHPLELSEKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEFK 84

Query: 86  FASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLG 140
              +V RLPFL SSNL  DVL G    IGFEDILN     E  G+PH ++E  LG
Sbjct: 85  AVQQVQRLPFLSSSNLSLDVLRGNDETIGFEDILNDPSQSEVMGEPHLMVEYKLG 139


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,465,062
Number of Sequences: 224733
Number of extensions: 742998
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 73,234,838
effective HSP length: 83
effective length of query: 59
effective length of database: 54,581,999
effective search space: 3220337941
effective search space used: 3220337941
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)