GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000971-TA|BGIBMGA000971-PA|IPR008012|Proteasome
maturation factor UMP1
         (142 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061060-1|AAL28608.1|  134|Drosophila melanogaster LD03247p pro...   105   3e-23
AE014134-3284|AAF53924.1|  134|Drosophila melanogaster CG9324-PA...   105   3e-23
AY051458-1|AAK92882.1|  459|Drosophila melanogaster GH13040p pro...    31   0.59 
AE013599-1044|AAM68775.1|  459|Drosophila melanogaster CG12214-P...    31   0.59 
AE013599-1043|AAF58828.1|  459|Drosophila melanogaster CG12214-P...    31   0.59 
BT023907-1|ABA81841.1|  652|Drosophila melanogaster GH16723p pro...    27   9.5  
BT001420-1|AAN71175.1|  558|Drosophila melanogaster GH12864p pro...    27   9.5  
AE014296-238|AAF47484.1|  652|Drosophila melanogaster CG9165-PA ...    27   9.5  

>AY061060-1|AAL28608.1|  134|Drosophila melanogaster LD03247p
           protein.
          Length = 134

 Score =  105 bits (251), Expect = 3e-23
 Identities = 53/100 (53%), Positives = 67/100 (67%)

Query: 42  KLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSSNL 101
           +L  VH L  SE NY+ ++   N+ MLRN +GL  P+K+ MER  A +VGRLPFL SSN 
Sbjct: 33  QLAHVHRLRDSELNYNEHQYNRNMQMLRNHEGLGVPLKMGMERFAARQVGRLPFLSSSNF 92

Query: 102 QHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLGL 141
             DVLTGR   IGFED +N  +  E   QPHAV+E+SLG+
Sbjct: 93  MDDVLTGRCDSIGFEDFMNLPENSEHMRQPHAVVEKSLGI 132


>AE014134-3284|AAF53924.1|  134|Drosophila melanogaster CG9324-PA
           protein.
          Length = 134

 Score =  105 bits (251), Expect = 3e-23
 Identities = 53/100 (53%), Positives = 67/100 (67%)

Query: 42  KLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSSNL 101
           +L  VH L  SE NY+ ++   N+ MLRN +GL  P+K+ MER  A +VGRLPFL SSN 
Sbjct: 33  QLAHVHRLRDSELNYNEHQYNRNMQMLRNHEGLGVPLKMGMERFAARQVGRLPFLSSSNF 92

Query: 102 QHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLGL 141
             DVLTGR   IGFED +N  +  E   QPHAV+E+SLG+
Sbjct: 93  MDDVLTGRCDSIGFEDFMNLPENSEHMRQPHAVVEKSLGI 132


>AY051458-1|AAK92882.1|  459|Drosophila melanogaster GH13040p
           protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 83  ERKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDIL 119
           + + AS +G LP  P+ NL+  VL G Y+D    D L
Sbjct: 120 KNQLASPIGTLPTAPTINLKSLVLNGTYLDWACVDTL 156


>AE013599-1044|AAM68775.1|  459|Drosophila melanogaster CG12214-PB,
           isoform B protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 83  ERKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDIL 119
           + + AS +G LP  P+ NL+  VL G Y+D    D L
Sbjct: 120 KNQLASPIGTLPTAPTINLKSLVLNGTYLDWACVDTL 156


>AE013599-1043|AAF58828.1|  459|Drosophila melanogaster CG12214-PA,
           isoform A protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 83  ERKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDIL 119
           + + AS +G LP  P+ NL+  VL G Y+D    D L
Sbjct: 120 KNQLASPIGTLPTAPTINLKSLVLNGTYLDWACVDTL 156


>BT023907-1|ABA81841.1|  652|Drosophila melanogaster GH16723p
           protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 59  NEEKLNLAMLRNVQGLHAPMKITMERKFASKVG---RLPFLPSSNLQHDVLTGRYIDIG 114
           N++++ LAML+ +  L+   +I  ER F   +G     P    SNL+ + L G   ++G
Sbjct: 215 NDDQV-LAMLQKLMCLNTTCRILAERSFLKTLGGGCSAPVAVWSNLKGEPLNGNSQEVG 272


>BT001420-1|AAN71175.1|  558|Drosophila melanogaster GH12864p
           protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 59  NEEKLNLAMLRNVQGLHAPMKITMERKFASKVG---RLPFLPSSNLQHDVLTGRYIDIG 114
           N++++ LAML+ +  L+   +I  ER F   +G     P    SNL+ + L G   ++G
Sbjct: 121 NDDQV-LAMLQKLMCLNTTCRILAERSFLKTLGGGCSAPVAVWSNLKGEPLNGNSQEVG 178


>AE014296-238|AAF47484.1|  652|Drosophila melanogaster CG9165-PA
           protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 59  NEEKLNLAMLRNVQGLHAPMKITMERKFASKVG---RLPFLPSSNLQHDVLTGRYIDIG 114
           N++++ LAML+ +  L+   +I  ER F   +G     P    SNL+ + L G   ++G
Sbjct: 215 NDDQV-LAMLQKLMCLNTTCRILAERSFLKTLGGGCSAPVAVWSNLKGEPLNGNSQEVG 272


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,073,843
Number of Sequences: 52641
Number of extensions: 271529
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 8
length of query: 142
length of database: 24,830,863
effective HSP length: 78
effective length of query: 64
effective length of database: 20,724,865
effective search space: 1326391360
effective search space used: 1326391360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)