GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000971-TA|BGIBMGA000971-PA|IPR008012|Proteasome
maturation factor UMP1
         (142 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical ...    31   0.31 
Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z95619-2|CAB09114.1|  450|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z35595-7|CAD57684.1|  133|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical pr...    27   5.1  

>AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical
           protein C49A9.8 protein.
          Length = 544

 Score = 31.1 bits (67), Expect = 0.31
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 52  SEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSSNLQHDVLTGRYI 111
           ++ +Y LN +KL  A + N Q  +A   +    +FA++ G+LP L +     +++   +I
Sbjct: 451 TKPSYKLNAKKL--AEMLNNQPTNAKEVLVKHVEFAARFGKLPMLDNYGRHQNIVEYYFI 508

Query: 112 DI 113
           DI
Sbjct: 509 DI 510


>Z95619-3|CAB54269.1|  490|Caenorhabditis elegans Hypothetical
          protein H21P03.3b protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 2  SFGLPPLKVKPEHDDNGVKIQENTFGI 28
          S G    KV+ +HDD+GV + E T G+
Sbjct: 68 SEGAAAEKVEKQHDDDGVVVHEETDGV 94


>Z95619-2|CAB09114.1|  450|Caenorhabditis elegans Hypothetical
          protein H21P03.3a protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 2  SFGLPPLKVKPEHDDNGVKIQENTFGI 28
          S G    KV+ +HDD+GV + E T G+
Sbjct: 28 SEGAAAEKVEKQHDDDGVVVHEETDGV 54


>Z35595-7|CAD57684.1|  133|Caenorhabditis elegans Hypothetical
          protein C01G6.6b protein.
          Length = 133

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 46 VHPLEASEKNYHLNEEKL 63
          +H L+ +EK ++LNEEKL
Sbjct: 35 LHALDENEKKFNLNEEKL 52


>Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical
          protein C01G6.6a protein.
          Length = 682

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 46 VHPLEASEKNYHLNEEKL 63
          +H L+ +EK ++LNEEKL
Sbjct: 35 LHALDENEKKFNLNEEKL 52


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,517,051
Number of Sequences: 27539
Number of extensions: 135579
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 5
length of query: 142
length of database: 12,573,161
effective HSP length: 75
effective length of query: 67
effective length of database: 10,507,736
effective search space: 704018312
effective search space used: 704018312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)