GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000971-TA|BGIBMGA000971-PA|IPR008012|Proteasome
maturation factor UMP1
         (142 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67250.1 68414.m07654 proteasome maturation factor UMP1 famil...    57   5e-09
At5g38650.1 68418.m04674 proteasome maturation factor UMP1 famil...    51   3e-07
At1g65380.1 68414.m07417 receptor-like protein CLAVATA2 (CLV2) i...    29   1.6  
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains...    28   2.1  
At1g74000.1 68414.m08570 strictosidine synthase family protein s...    28   2.1  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    27   4.9  
At2g29560.1 68415.m03590 enolase, putative similar to enolase [S...    26   8.5  

>At1g67250.1 68414.m07654 proteasome maturation factor UMP1 family
           protein contains Pfam profile PF05348: Proteasome
           maturation factor UMP1
          Length = 141

 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 2/103 (1%)

Query: 20  KIQENTFGIR-DPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPM 78
           KI     G++ D +  GL   +  +   HPLE+S ++   ++E L   ++ +  G   P+
Sbjct: 6   KIAHEIGGVKNDALRFGLHGVKSNIIGSHPLESSYESEKKSKEALKRTVIAHAYGTALPL 65

Query: 79  KITMERKFASKVGRLPF-LPSSNLQHDVLTGRYIDIGFEDILN 120
           K+ M+R+  S+  R P  +PSS L  +V TG   D GFED LN
Sbjct: 66  KMDMDRQILSRFQRPPGPIPSSMLGLEVYTGAVDDFGFEDYLN 108


>At5g38650.1 68418.m04674 proteasome maturation factor UMP1 family
           protein contains Pfam profile PF05348: Proteasome
           maturation factor UMP1
          Length = 141

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 20  KIQENTFGIR-DPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPM 78
           KI     G++ D +  GL   +  +   HPLE + ++   ++E++   ++ +  G   P+
Sbjct: 6   KIAHEIGGMKNDALRFGLHGVKSDILRSHPLETAYESGKQSQEEMKRRVITHTYGAALPL 65

Query: 79  KITMERKFASKVGRLPF-LPSSNLQHDVLTGRYIDIGFEDILNTRDLCET 127
           K+ ++R+  S+  R P  +PSS L  +V TG   + GFED LN     ET
Sbjct: 66  KMDLDRQILSRFQRPPGPIPSSMLGLEVYTGALDNFGFEDYLNDPRESET 115


>At1g65380.1 68414.m07417 receptor-like protein CLAVATA2 (CLV2)
           identical to receptor-like protein CLAVATA2 [Arabidopsis
           thaliana] gi|6049566|gb|AAF02654contains leucine
           rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611;
          Length = 720

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 21  IQENTFGIRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKI 80
           +  N F  R P  + +  T  KLG V  L+ S  ++   +  L +  L+++Q L     +
Sbjct: 295 LSHNGFSGRLP--SRISETTEKLGLVL-LDLSHNSFS-GDIPLRITELKSLQALRLSHNL 350

Query: 81  TMERKFASKVGRLPFLPSSNLQHDVLTG 108
            +     +++G L +L   +L H+ LTG
Sbjct: 351 -LTGDIPARIGNLTYLQVIDLSHNALTG 377


>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 478

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 58  LNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFLPSSNLQHDVLTGRYID 112
           L++++  + + + V  + +   +  E K  SK GR   L   N   D++T  YID
Sbjct: 93  LDDDEAVVVVFQGVNVVWSSTVVDKEDKHNSKEGRYLTLTFENHHRDIITNTYID 147


>At1g74000.1 68414.m08570 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]; contains strictosidine synthase
           domain PF03088
          Length = 328

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 73  GLHA-PMKITMERKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDL 124
           GLH  P +  + +K A  VG  PFL    L  D  TG      F      RD+
Sbjct: 120 GLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDV 172


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
          (RbohA) / NADPH oxidase identical to respiratory burst
          oxidase protein A from Arabidopsis thaliana
          [gi:3242781]
          Length = 902

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 42 KLGFVHPLEASEKNYHLNEEKLNLAMLRNVQGLHAP-MKITME 83
          KLGF H    +E  Y+  E   N+A   N  G   P ++IT++
Sbjct: 9  KLGFEHVRYYTESPYNRGESSANVATTSNYYGEDEPYVEITLD 51


>At2g29560.1 68415.m03590 enolase, putative similar to enolase
           [Spinacia oleracea] gi|8919731|emb|CAB96173
          Length = 475

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 17  NGVKIQENTFGIRDPMIAGLGATRPKLGFVHPLEASEKNYH 57
           +G K   NTF I++ MI  +GA+R    F   L+   + YH
Sbjct: 196 SGGKHASNTFAIQEIMILPIGASR----FEEALQWGSETYH 232


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.139    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,173
Number of Sequences: 28952
Number of extensions: 129843
Number of successful extensions: 257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 7
length of query: 142
length of database: 12,070,560
effective HSP length: 74
effective length of query: 68
effective length of database: 9,928,112
effective search space: 675111616
effective search space used: 675111616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)