Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000970-TA|BGIBMGA000970-PA|IPR009244|MED7
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    33   0.043
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    27   2.9  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   5.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   6.6  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   6.6  

>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 32.7 bits (71), Expect = 0.043
 Identities = 15/58 (25%), Positives = 29/58 (50%)

Query: 108 KVEDXXXXXXXXXXXXNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQDILQ 165
           KVE+            N++RPHQ+RE+L +++E Q +         + H  ++ + L+
Sbjct: 256 KVENIRVLLLNLHHLINDYRPHQSRESLIMLLEKQLKHEESQVELLRTHNRQMTETLE 313


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 7   VSSLPLPPMQYINFYTDENVRRNRAPLPPRP 37
           +SSL +P  ++++   D N++R+ +PL   P
Sbjct: 207 ISSLAVPSTKHLDGERDRNLKRSTSPLSSSP 237


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 132 RETLRVMMELQKRQRVETAARFKKHLDKVQDILQNA----LQSLPDQNELESNFKVPNEL 187
           +E L +   L+K    ET  + K+  + +QD+L+N     ++S  +  EL    KV  E 
Sbjct: 123 QEHLDIKKRLEKSD--ETVCKLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKES 180

Query: 188 LDQMENNTCNIQKAD 202
           +   E+   ++  ++
Sbjct: 181 VKSHESELSSVMSSE 195


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 156  HLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCNIQKADPCFELDR 209
            HLD++ + LQ+ LQ+LP +  +   +++   L++  EN+         C+ + R
Sbjct: 2280 HLDELNNSLQHYLQNLPCKKFIPVFYQLAARLMN--ENSKFQQSLTSICYNVGR 2331


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 174 QNELESNFKVPNELLDQMENN 194
           QNELE  FK   E LD ++ N
Sbjct: 60  QNELEKQFKEREEHLDTLQTN 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 884,616
Number of Sequences: 5004
Number of extensions: 33243
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 8
length of query: 219
length of database: 2,362,478
effective HSP length: 70
effective length of query: 149
effective length of database: 2,012,198
effective search space: 299817502
effective search space used: 299817502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)