Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000970-TA|BGIBMGA000970-PA|IPR009244|MED7
(219 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1467 - 33808507-33808588,33808869-33808942,33809028-338091... 77 1e-14
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 31 0.73
03_05_1042 - 29893649-29893721,29893960-29894033,29894111-298941... 30 1.7
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 1.7
08_02_0923 - 22649420-22649605,22649694-22649774,22649867-226501... 29 3.0
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 3.9
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 28 6.8
11_06_0286 + 21945699-21946213,21946255-21947542 27 9.0
04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280 27 9.0
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574 27 9.0
>04_04_1467 -
33808507-33808588,33808869-33808942,33809028-33809194,
33809392-33809461,33809544-33809681
Length = 176
Score = 77.0 bits (181), Expect = 1e-14
Identities = 53/171 (30%), Positives = 77/171 (45%), Gaps = 6/171 (3%)
Query: 8 SSLPLPPMQYINFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIRSLESQGFRRL 67
SS PP Y Y D + AP PP P+ Y +FG ++ D ++ SLE QG R+L
Sbjct: 4 SSAYPPPPPYYRLYKDYEKDPSSAPEPPPPVDGPYQLFGATYTTD-VVLPSLEDQGVRQL 62
Query: 68 YPMH--FERRRELKKXXXXXXXXXXXXXXXXVHCPDSPKRAEKVEDXXXXXXXXXXXXNE 125
YP + ++EL+ V P + A +VED N
Sbjct: 63 YPKSPDIDFKKELRTLNRELQLHILELADILVERPS--QYARRVEDISLIFKNLHHLLNS 120
Query: 126 FRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQNE 176
RPHQAR TL M+E Q ++R + K+ ++ Q +L +L L D N+
Sbjct: 121 LRPHQARATLIHMLENQIQRRKQAIEDIKQRREEAQKLLGESLLIL-DGNQ 170
>05_04_0209 -
19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 135 LRVMMELQKRQRVETAARFKKHLDKVQD-ILQNALQSLPDQNELESN 180
L V +L VE +K +D D I+ N L S+PD N+ +N
Sbjct: 645 LEVFPQLNFLTLVEVCMEYKNDIDGAADYIIHNVLPSIPDNNDAHAN 691
>03_05_1042 -
29893649-29893721,29893960-29894033,29894111-29894179,
29894333-29894438,29894548-29894664,29895412-29895527,
29895612-29895698,29897281-29897309,29897914-29898169
Length = 308
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 11 PLPPMQYINFYTDENV--RRNRAPLPPRPIHDSYSMFGNSFNADDAII 56
P+PP + F+T + R R LP RP S +FG N A++
Sbjct: 53 PVPPQKVAPFFTPSKIFFHRVRLVLPFRPFGSSVPIFGEFENRVQAVL 100
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 130 QARETLRVMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLD 189
QA E LR + +RQ E ++ + + K+Q + AL +L N F+ EL
Sbjct: 866 QANEELREKISSLERQLEEARSKLQDEIIKLQGEKERALDNLQQSNTSIKTFE--EELEK 923
Query: 190 QMENNT 195
Q E+N+
Sbjct: 924 QREHNS 929
>08_02_0923 -
22649420-22649605,22649694-22649774,22649867-22650146,
22650412-22650716,22650809-22650961,22651425-22652261
Length = 613
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 154 KKHLDKVQDILQNALQSLPDQNELESNFKVP--NELLDQMENNTCNIQKAD-PCFELDRI 210
KK+ K Q+ ++ +QSL Q++L S F++P E ++ ++ + D P D +
Sbjct: 510 KKNAIKFQNYFESTIQSLSKQHDL-SQFRLPPLPEFPSELSSHPVTTRPGDTPVDPADNV 568
Query: 211 MCNVVDNMR 219
NV ++ R
Sbjct: 569 AANVPEDSR 577
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 139 MELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQN 175
+++QK QR+ A R KHL+ ++Q AL+++ +N
Sbjct: 1329 IKVQKNQRMHQARRSYKHLNASVLVVQTALRAMAARN 1365
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 34 PPRPIHDSYSMFGNSFNADDAI 55
PP +H YS FG SF DA+
Sbjct: 65 PPSRVHPHYSGFGFSFTVTDAV 86
>11_06_0286 + 21945699-21946213,21946255-21947542
Length = 600
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 171 LPDQNELE-SNFKVPNELLDQMENNTCNIQKAD 202
LP ELE +N VPNEL + +ENN I K +
Sbjct: 566 LPKFKELELNNSHVPNELKEAVENNKRIILKCN 598
>04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280
Length = 434
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 156 HLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCNIQKADPCFELD 208
HL++++ + NAL SLPD L N ++ N +++ + +I K ELD
Sbjct: 174 HLEELR-LASNALISLPDSIGLLLNLRILNVGSNRLRSLPDSISKCRSLIELD 225
>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
Length = 602
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 8 SSLPLPPMQYINFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIR 57
S + LPP + Y A LPP I+ S + GNSF+++ +++
Sbjct: 170 SYIVLPPAA-ASIYKTSTSEGGGAQLPPPSINSSSLLTGNSFHSNVTVLK 218
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,450,413
Number of Sequences: 37544
Number of extensions: 199623
Number of successful extensions: 526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 10
length of query: 219
length of database: 14,793,348
effective HSP length: 79
effective length of query: 140
effective length of database: 11,827,372
effective search space: 1655832080
effective search space used: 1655832080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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