Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000970-TA|BGIBMGA000970-PA|IPR009244|MED7
         (219 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   0.97 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   0.97 
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   3.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   6.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.0  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 11/52 (21%), Positives = 29/52 (55%)

Query: 166 NALQSLPDQNELESNFKVPNELLDQMENNTCNIQKADPCFELDRIMCNVVDN 217
           NA  +  ++   E   K+ +E ++++ NN  +I +++ C +  +++   +DN
Sbjct: 74  NADTTFNEEKFRERTTKLDSEQVNRLVNNCKDITESNSCKKSSKLLQCFIDN 125


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 154 KKHLDKVQDILQNA-LQSLPDQNELESNFKVPNELLDQMENNTCNIQKA 201
           K  +D +Q  LQ   + SL D N+      +P    +  ENNTC+I  +
Sbjct: 133 KDFIDFIQKNLQCCGVHSLSDYNDKP----IPASCCNSPENNTCSISNS 177


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 159 KVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCN 197
           K +  +Q  L  + D+   +   K   ELL ++ NN CN
Sbjct: 28  KDRPYVQKQLHCILDRGHCDVIGKKIKELLPEVLNNHCN 66


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 22  TDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIRSLESQGFRRLY 68
           T +   R+R        H   S   N++N ++   + L    +R+LY
Sbjct: 62  TSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLYCNNYRKLY 108


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 1   MSETAQVSSLPLPPMQYINFYTDENVRR 28
           +S T  +  L  P +  I F  D+N+RR
Sbjct: 746 LSATVTLVCLYSPKIYIILFQPDKNIRR 773


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 1   MSETAQVSSLPLPPMQYINFYTDENVRR 28
           +S T  +  L  P +  I F  D+N+RR
Sbjct: 836 LSATVTLVCLYSPKIYIILFQPDKNIRR 863


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,747
Number of Sequences: 429
Number of extensions: 2193
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 219
length of database: 140,377
effective HSP length: 55
effective length of query: 164
effective length of database: 116,782
effective search space: 19152248
effective search space used: 19152248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)