GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000970-TA|BGIBMGA000970-PA|IPR009244|MED7
         (219 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 196 CNIQKADPCFELDRI 210
           C ++  DPCF  D I
Sbjct: 427 CGLRNGDPCFFHDTI 441


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 196 CNIQKADPCFELDRI 210
           C ++  DPCF  D I
Sbjct: 427 CGLRNGDPCFFHDTI 441


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 196 CNIQKADPCFELDRI 210
           C ++  DPCF  D I
Sbjct: 427 CGLRNGDPCFFHDTI 441


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 196 CNIQKADPCFELDRI 210
           C ++  DPCF  D I
Sbjct: 427 CGLRNGDPCFFHDTI 441


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,392
Number of Sequences: 317
Number of extensions: 1638
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 114,650
effective HSP length: 54
effective length of query: 165
effective length of database: 97,532
effective search space: 16092780
effective search space used: 16092780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)