Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000970-TA|BGIBMGA000970-PA|IPR009244|MED7
(219 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 82 2e-16
At5g03220.1 68418.m00270 transcriptional co-activator-related co... 82 3e-16
At5g42920.2 68418.m05233 expressed protein 29 1.9
At5g42920.1 68418.m05232 expressed protein 29 1.9
At3g24120.1 68416.m03028 myb family transcription factor contain... 29 3.3
At1g45233.2 68414.m05190 expressed protein Since this genomic se... 28 4.3
At5g54320.1 68418.m06765 hypothetical protein contains Pfam prof... 28 5.7
At4g13640.1 68417.m02122 myb family transcription factor contain... 28 5.7
At3g32190.1 68416.m04102 hypothetical protein 27 7.5
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 27 7.5
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 27 10.0
At5g34895.1 68418.m04113 hypothetical protein similar to At2g049... 27 10.0
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 27 10.0
At2g43040.1 68415.m05341 calmodulin-binding protein similar to p... 27 10.0
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 27 10.0
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 27 10.0
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 27 10.0
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 82.2 bits (194), Expect = 2e-16
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 13 PPMQYINFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIRSLESQGFRRLYPM-- 70
PP Y Y D + + AP PP PI +Y FG ++ +D ++ SLE QG +LYP
Sbjct: 8 PPPPYYRLYKDFSENTDSAPEPPPPIEGTYVCFGGNYTTED-VLPSLEEQGVPQLYPKDS 66
Query: 71 HFERRRELKKXXXXXXXXXXXXXXXXVHCPDSPKRAEKVEDXXXXXXXXXXXXNEFRPHQ 130
+ + ++EL+ V P + A+++ + N RPHQ
Sbjct: 67 NLDYKKELRSLNRELQLHILELADVLVDRPS--QYAKRIGEISSIFKNLHHLLNSLRPHQ 124
Query: 131 ARETLRVMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPD 173
AR TL +MELQ +QR + K+ ++ Q +L++A +L D
Sbjct: 125 ARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDD 167
>At5g03220.1 68418.m00270 transcriptional co-activator-related
contains weak similarity to Cofactor required for Sp1
transcriptional activation subunit 9 (Transcriptional
co-activator CRSP33) (RNA polymerase transcriptional
regulation mediator subunit 7 homolog) (hMED7)
(Activator-recruited cofactor 34 kDa component) (ARC34)
(Swiss-Prot:O43513) [Homo sapiens]
Length = 168
Score = 81.8 bits (193), Expect = 3e-16
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 13 PPMQYINFYTDENVRRNRAPLPPRPIHDSYSMFGNSFNADDAIIRSLESQGFRRLYPM-- 70
PP Y Y D + N AP PP PI +Y FG ++ +D ++ SLE QG +LYP
Sbjct: 8 PPPPYYRLYKDYSENPNSAPEPPPPIEGTYVCFGGNYTTED-VLPSLEEQGVPQLYPKDS 66
Query: 71 HFERRRELKKXXXXXXXXXXXXXXXXVHCPDSPKRAEKVEDXXXXXXXXXXXXNEFRPHQ 130
+ + + EL+ V P + A+++ + N RPHQ
Sbjct: 67 NLDYKNELRSLNRELQLHILELADVLVDRPS--QYAKRIGEISSIFKNLHHLLNSLRPHQ 124
Query: 131 ARETLRVMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQ 174
AR TL +MELQ +QR + K+ ++ Q +L++A +L Q
Sbjct: 125 ARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDGQ 168
>At5g42920.2 68418.m05233 expressed protein
Length = 819
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 126 FRPHQARETL--RVMMELQKRQRVETAARFKKHLDKVQDILQNALQ-SLPDQNEL 177
F HQ +E R +E QK+ +ET A KK L + L++ + SLP QN L
Sbjct: 177 FELHQRKELCKHRARLEQQKKSLLETIAERKKFLSSLPLHLKSLKKASLPVQNHL 231
>At5g42920.1 68418.m05232 expressed protein
Length = 702
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 126 FRPHQARETL--RVMMELQKRQRVETAARFKKHLDKVQDILQNALQ-SLPDQNEL 177
F HQ +E R +E QK+ +ET A KK L + L++ + SLP QN L
Sbjct: 60 FELHQRKELCKHRARLEQQKKSLLETIAERKKFLSSLPLHLKSLKKASLPVQNHL 114
>At3g24120.1 68416.m03028 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 295
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 129 HQARETLRVMMELQKR--QRVETAARFKKHLDK----VQDILQNALQSLPDQNELESNFK 182
+Q E LR ME+Q+R ++E R + ++ +Q IL+ A ++ +Q + +
Sbjct: 138 YQVTEALRAQMEVQRRLHDQLEVQRRLQLRIEAQGKYLQSILEKACKAFDEQAATFAGLE 197
Query: 183 VPNELLDQMENNTCNIQKAD--PCFELDRIM 211
E L ++ N + P F+ ++M
Sbjct: 198 AAREELSELAIKVSNSSQGTSVPYFDATKMM 228
>At1g45233.2 68414.m05190 expressed protein Since this genomic
sequence region is unfinished, the annotated gene may be
missing a stop codon or start codon
Length = 448
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 126 FRPHQARET--LRVMMELQKRQRVETAARFKKHLDKVQDILQNALQ-SLPDQNEL 177
F HQ +E LRV +E QK+ +E+ A K L + L++ + SLP Q++L
Sbjct: 153 FELHQRKELCKLRVRLEQQKKSLLESNAERNKFLSSLPVHLKSLKKASLPVQSQL 207
>At5g54320.1 68418.m06765 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 369
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 190 QMENNTCNIQKADPCFELDRIMCNVVDNM 218
Q + NI+ +PCF L R+M + DNM
Sbjct: 173 QSNSEWINIRIENPCFYLSRVMYSKKDNM 201
>At4g13640.1 68417.m02122 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 292
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 129 HQARETLRVMMELQKR--QRVETAARFKKHLDK----VQDILQNALQSLPDQNELESNFK 182
+Q E LR ME+Q+R +++E R + ++ +Q IL+ A +++ +Q + +
Sbjct: 134 YQVTEALRAQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAIEEQAVAFAGLE 193
Query: 183 VPNELLDQM 191
E L ++
Sbjct: 194 AAREELSEL 202
>At3g32190.1 68416.m04102 hypothetical protein
Length = 358
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 157 LDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCNIQKAD 202
LD+ QD++ +S +++L S+ +V +L DQ+EN + + +++
Sbjct: 67 LDREQDVMAWKDKSSSLESDLRSSTEVKQKLEDQLENLSSKLMQSN 112
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 137 VMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLDQM 191
V + + RQ AA L +V D+ ++ + L +++ L NF V ELLD+M
Sbjct: 68 VYLMIASRQNCN-AASLLFFLHRVVDVFKHYFEELEEES-LRDNFVVVYELLDEM 120
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 162 DILQNALQSLPDQNELESNFKVPNELLDQMENNTCNIQKADPCF 205
+I+++ L E E +VP EL+ Q + +Q+ +PCF
Sbjct: 702 EIIESVKSGLLAPIEAEPELEVPKELISQSQLKELTLQR-NPCF 744
>At5g34895.1 68418.m04113 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
At3g47270, At2g02200
Length = 490
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 156 HLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCNIQKAD 202
H ++ +L+ A++++ Q+ + ++ EN+TCN+++ +
Sbjct: 189 HQGRIDHVLKPAIETVVHQSRKRKSMSFGEKVKLVYENSTCNVEETE 235
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 143 KRQRVETAARFKKHLD--KVQDILQNALQSLPDQNE 176
K+ +ETA KH K+QD+L+NA +L D +
Sbjct: 377 KKSEMETAFFELKHCPPLKIQDVLKNAYSALSDNEK 412
>At2g43040.1 68415.m05341 calmodulin-binding protein similar to
pollen-specific calmodulin-binding protein MPCBP
GI:10086260 from [Zea mays]; contains Pfam profile
PF00515: TPR Domain
Length = 704
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 141 LQKRQRV-ETAARFKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLDQMENNTCNIQ 199
LQK R+ E A K LD V+ I Q + N+L+ ELL + + + Q
Sbjct: 135 LQKLGRITEAAHECKSVLDSVEKIFQQGIPDAQVDNKLQETVSHAVELLPALWKESGDYQ 194
Query: 200 KA 201
+A
Sbjct: 195 EA 196
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 133 ETLRVM-MELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLDQM 191
E LR++ +EL R+ VE+ + L + + L N ++ ++ ++ + FK+ NE M
Sbjct: 512 EQLRLVGVELSLRKEVESMKLEAESLRRENNCLLNRVKGNGEEADIMTTFKLDNE----M 567
Query: 192 ENNTCNIQ 199
+ C++Q
Sbjct: 568 KMRVCHLQ 575
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
(TATA-binding protein) -interacting protein 120 (TIP120);
contains TIGRFAM profile TIGR01612: reticulocyte binding
protein
Length = 1866
Score = 27.1 bits (57), Expect = 10.0
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 132 RETLRVMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQ--NELESNFKVPNELLD 189
+ ++ V+M+L K V + HL + + +L SL DQ N +E + +
Sbjct: 1288 KASIGVVMKLAKGAGVA----LRPHLSDLVCCMLESLSSLEDQGLNYVELHAANIGIETE 1343
Query: 190 QMENNTCNIQKADPCFELDRIMCNVVD 216
++EN +I K P +E + N+VD
Sbjct: 1344 KLENLRISISKGSPMWETLDLCINIVD 1370
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 27.1 bits (57), Expect = 10.0
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 137 VMMELQKRQRVETAARFKKHLDKVQDILQNALQSLPDQNELESNFKVPNELLDQM 191
+ + + RQ AA L +V D+ ++ + L +++ L NF V ELLD+M
Sbjct: 68 IYLMIASRQNCN-AASLLFFLHRVVDVFKHYFEELEEES-LRDNFVVVYELLDEM 120
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,493,367
Number of Sequences: 28952
Number of extensions: 166865
Number of successful extensions: 512
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 17
length of query: 219
length of database: 12,070,560
effective HSP length: 78
effective length of query: 141
effective length of database: 9,812,304
effective search space: 1383534864
effective search space used: 1383534864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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