GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000969-TA|BGIBMGA000969-PA|undefined
         (69 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    23   3.8  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    23   3.8  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    22   8.7  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    22   8.7  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 1   MSKRHVVTSGPKHMRGS---HGAGDLYPTER 28
           +S RHVV+ GP   R S   +   D+YP  R
Sbjct: 112 LSNRHVVSPGPISARASFINYEEIDIYPIYR 142


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 2   SKRHVVTSGPKH-MRGSHGAG 21
           S RHV+ + PKH + G  G G
Sbjct: 617 SDRHVIAAKPKHLLSGKRGNG 637


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 6   VVTSGPKHMRGSHGAGDLYPTERLA 30
           V    P++ RG +  G + P E LA
Sbjct: 891 VSRDSPRYSRGGYSRGSVPPRETLA 915


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 3/22 (13%)

Query: 49  KKAKEKTCCICPPPNY---FPN 67
           KK K     I PPPN+   FPN
Sbjct: 228 KKTKYNASQIVPPPNWAKMFPN 249


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,020
Number of Sequences: 5004
Number of extensions: 8667
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 69
length of database: 2,362,478
effective HSP length: 49
effective length of query: 20
effective length of database: 2,117,282
effective search space: 42345640
effective search space used: 42345640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)