GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000969-TA|BGIBMGA000969-PA|undefined
         (69 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0205 - 21567467-21567655,21567791-21567876,21567965-215680...    25   5.7  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    25   7.5  
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448           25   7.5  

>09_06_0205 -
           21567467-21567655,21567791-21567876,21567965-21568037,
           21568267-21568326,21568887-21568935,21569328-21569431,
           21569587-21569640,21569719-21569763,21569817-21569879,
           21570415-21570615,21570620-21570797,21570900-21570993,
           21571075-21572478,21572560-21572604,21572710-21572788,
           21573424-21573589,21573679-21573771,21573872-21573929,
           21574063-21574120,21574210-21574367,21575130-21575177,
           21575269-21575320,21575404-21575529
          Length = 1160

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 8   TSGPKHMRGSHGAGDLYPTERLACRDVXXXXXXXXXLSYNGKKAKEKTCCICPPPNYFPN 67
           T+ P   + ++ + D+ P+   AC D          ++ NG+K   K  C     +Y   
Sbjct: 333 TAAPAEPKDNYLSLDMEPSTWRACYDQISDASHTDDVARNGRKFGHKQICSLQSYSYQWL 392

Query: 68  ED 69
           ED
Sbjct: 393 ED 394


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query: 58   ICPPPNYFPN 67
            ICPPP YF N
Sbjct: 1166 ICPPPEYFAN 1175


>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
          Length = 850

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 2   SKRHVVTSGPKHMRGSHGAGDLYPTERLA 30
           S+RH   S P  +R  HG G  +  ERLA
Sbjct: 718 SRRHRSNSAPHLLRRDHGGGSSH-EERLA 745


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.136    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,636
Number of Sequences: 37544
Number of extensions: 65841
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 3
length of query: 69
length of database: 14,793,348
effective HSP length: 49
effective length of query: 20
effective length of database: 12,953,692
effective search space: 259073840
effective search space used: 259073840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)