GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000969-TA|BGIBMGA000969-PA|undefined
         (69 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   5.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   5.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   7.3  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 59  CPPPNYFPNED 69
           C   +YFPNE+
Sbjct: 118 CSRIDYFPNEE 128


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 8   TSGPKHMRGSHGAGDLYPT 26
           T GP H    HG   ++ T
Sbjct: 411 TPGPHHHTMGHGHSHIHAT 429


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/13 (46%), Positives = 7/13 (53%)

Query: 9   SGPKHMRGSHGAG 21
           S P H  G+H  G
Sbjct: 332 SSPHHQHGNHTMG 344


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,435
Number of Sequences: 429
Number of extensions: 669
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 69
length of database: 140,377
effective HSP length: 45
effective length of query: 24
effective length of database: 121,072
effective search space:  2905728
effective search space used:  2905728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)