GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000968-TA|BGIBMGA000968-PA|undefined
         (55 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   0.24 
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    23   0.24 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    19   3.0  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    18   9.1  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    18   9.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    18   9.1  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 0.24
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 5   MQMQHPHCIIPRRVFIWHQRK 25
           ++M H  C+  R++ IW Q +
Sbjct: 254 IEMAHALCLTERQIKIWFQNR 274


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
          protein.
          Length = 96

 Score = 23.0 bits (47), Expect = 0.24
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 5  MQMQHPHCIIPRRVFIWHQRK 25
          ++M H  C+  R++ IW Q +
Sbjct: 36 IEMAHALCLTERQIKIWFQNR 56


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 12  CIIPRRVFI 20
           C+IP RVFI
Sbjct: 302 CLIPFRVFI 310


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 17.8 bits (34), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 31  VDQLPKPATGPSDITV 46
           V   P PAT  S++TV
Sbjct: 223 VKSRPSPATIISNVTV 238


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 17.8 bits (34), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 31  VDQLPKPATGPSDITV 46
           V   P PAT  S++TV
Sbjct: 223 VKSRPSPATIISNVTV 238


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 17.8 bits (34), Expect = 9.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 31  VDQLPKPATGPSDITV 46
           V   P PAT  S++TV
Sbjct: 543 VKSRPSPATIISNVTV 558


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.137    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,692
Number of Sequences: 317
Number of extensions: 393
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 55
length of database: 114,650
effective HSP length: 35
effective length of query: 20
effective length of database: 103,555
effective search space:  2071100
effective search space used:  2071100
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.9 bits)
S2: 34 (17.8 bits)