GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000968-TA|BGIBMGA000968-PA|undefined
         (55 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    23   3.7  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    23   4.9  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    22   8.5  

>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 17  RVFIWHQRKTSTTTVDQLPKPA 38
           R  +W   K    TV   PKP+
Sbjct: 235 RAVVWRANKVEPNTVPHTPKPS 256


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)

Query: 23  QRKTSTTTVDQLP 35
           QRKTS+ T+ QLP
Sbjct: 202 QRKTSSNTLSQLP 214


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 386

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 27 STTTVDQLPKP-ATGPSDITVRHLIVYVKG 55
          S T  DQLPKP A  P+ ++V     + KG
Sbjct: 22 SVTISDQLPKPSANNPNLLSVDTRPTHRKG 51


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.137    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,395
Number of Sequences: 5004
Number of extensions: 7112
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 55
length of database: 2,362,478
effective HSP length: 36
effective length of query: 19
effective length of database: 2,182,334
effective search space: 41464346
effective search space used: 41464346
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 45 (22.2 bits)