GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000968-TA|BGIBMGA000968-PA|undefined
         (55 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0771 + 6453130-6454488                                           27   1.4  
01_06_0300 + 28312590-28313939                                         27   1.8  
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13...    27   2.4  
02_05_0361 + 28285994-28286063,28286341-28286393,28286528-282865...    26   3.2  
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863...    26   3.2  
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12...    26   4.2  

>11_01_0771 + 6453130-6454488
          Length = 452

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 16  RRVFIWHQRKTSTTTVDQLPKPATGPSDITVRHLIVYVKG 55
           +++  W +R T     D LP  + GP    V    +Y KG
Sbjct: 175 KQINAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKG 214


>01_06_0300 + 28312590-28313939
          Length = 449

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 14  IPRRVFIWHQRKTST--TTVDQLPKPATGPSDITVRHL 49
           +PR V +W   +     T    +PKP TGPSD  + H+
Sbjct: 369 LPRMVPVWPFLRPHAHGTLYFLVPKPMTGPSDPQMYHI 406


>11_01_0017 -
           129261-129335,129352-129426,129565-129645,129929-130040,
           130131-131177,131256-131347,131773-131943,132150-132253,
           132367-132501,132583-132724,132803-133059,133126-133337,
           133417-133454
          Length = 846

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 24  RKTSTTTVDQLPKPATGPSDIT 45
           R  ST++V  +PKP T P+ +T
Sbjct: 242 RSRSTSSVTNVPKPTTRPATVT 263


>02_05_0361 +
           28285994-28286063,28286341-28286393,28286528-28286588,
           28286825-28287912
          Length = 423

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 18  VFIWHQRKTSTTTVDQLPKPATGPSDITVRHLIV 51
           +F++H + +ST TV   P P      IT+ ++++
Sbjct: 137 LFLFHSKTSSTQTVTSSPAPTISIPKITLIYVVL 170


>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
            39586479-39586640,39586753-39586877,39586992-39587030,
            39587290-39587476,39587643-39587713,39589371-39589564,
            39589656-39589767,39589899-39590082,39590177-39590503,
            39590780-39591061,39591148-39591621,39591730-39591813,
            39591850-39591939,39592024-39592247,39592503-39592600,
            39592679-39593169,39593249-39593520,39594266-39594522,
            39594672-39594890,39595007-39595167,39595249-39595441,
            39595528-39595633,39595947-39596121,39596404-39596556,
            39596663-39596794,39597120-39597184,39597754-39597819,
            39598433-39598511,39598587-39598767,39598864-39598976
          Length = 1889

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 23   QRKTSTTTVDQLPKP-ATGPSDITVRHLIV 51
            +R+ S   + +LP P A  P+ I  RHL+V
Sbjct: 1827 RRRQSANQIRRLPNPPAPMPASIAARHLVV 1856


>12_01_0017 -
           127617-127775,127920-128000,128284-128395,128486-129538,
           129617-129705,130136-130309,130566-130687,130790-130924,
           131132-131494,131561-131728,131850-131889
          Length = 831

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 24  RKTSTTTVDQLPKPATGPSDITVRH 48
           R  ST++V  +PKP T P+  T RH
Sbjct: 216 RSRSTSSVTNVPKPTTRPA--TARH 238


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.137    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,694,442
Number of Sequences: 37544
Number of extensions: 50512
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 6
length of query: 55
length of database: 14,793,348
effective HSP length: 36
effective length of query: 19
effective length of database: 13,441,764
effective search space: 255393516
effective search space used: 255393516
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)