GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000968-TA|BGIBMGA000968-PA|undefined
         (55 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)                   26   4.9  
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)                   26   4.9  
SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)                    26   4.9  
SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)                     26   4.9  
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)                   25   6.5  
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  

>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 26  TSTTTVDQLPKPATGPSDIT 45
           TSTTT+  LP+P +  S IT
Sbjct: 461 TSTTTITVLPQPTSASSSIT 480


>SB_22415| Best HMM Match : TT_ORF2 (HMM E-Value=3.7)
          Length = 483

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 15  PRRVFIWHQRKTSTTTVDQLPKPATGPS 42
           P+  F++ +R ++    D+LP P   PS
Sbjct: 122 PKHAFVFQKRPSTLPKSDRLPAPKRSPS 149


>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
          Length = 731

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 22  HQRKTSTTTVDQLPKPATGPS 42
           H+RKT+ T    L KP++GP+
Sbjct: 151 HERKTTRTQTLSLIKPSSGPT 171


>SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)
          Length = 680

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 2   DAFMQMQHPHCIIPRRVFIWHQRKTSTTTVDQLPKPATGPSDITV 46
           + F  ++  H IIP+ +FI H      T    L        D+TV
Sbjct: 331 EGFYWVKKAHSIIPKDIFILHNLCFQATLSSSLKTGVGASVDVTV 375


>SB_15118| Best HMM Match : IncA (HMM E-Value=0.44)
          Length = 835

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 11  HCIIPR--RVFIWHQRKTSTTTVDQLPKPATGPS 42
           HC+  R  R  ++ +R+   TT+  LP  AT P+
Sbjct: 463 HCVDERLDRALVYLEREQQITTISSLPPIATLPA 496


>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 23  QRKTSTTTV-DQLPKPATGPSDIT 45
           QR++  T V D  PKPA  PSD T
Sbjct: 500 QRESPATRVSDMSPKPARPPSDYT 523


>SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)
          Length = 221

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 5   MQMQHPHCIIPRRVFIWHQRKTST-TTVDQLPKPAT 39
           + MQ+P  + P R   WH   T+T + + ++ +PA+
Sbjct: 119 LAMQNPTPLAPLRSRTWHSITTTTPSKITEIKRPAS 154


>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 5   MQMQHPHCIIPRRVFIWHQRKTST-TTVDQLPKPAT 39
           + MQ+P  + P R   WH   T+T + + ++ +PA+
Sbjct: 378 LAMQNPTPLAPLRSRTWHSITTTTPSKITEIKRPAS 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.137    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,709
Number of Sequences: 59808
Number of extensions: 56818
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 8
length of query: 55
length of database: 16,821,457
effective HSP length: 35
effective length of query: 20
effective length of database: 14,728,177
effective search space: 294563540
effective search space used: 294563540
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)