GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000968-TA|BGIBMGA000968-PA|undefined
         (55 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    28   0.91 
AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical ...    26   2.8  
U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical pr...    25   6.4  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    25   6.4  
AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical ...    25   6.4  
Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 19  FIWHQRKTSTTTVDQLPKPATGPSDITV 46
           F W     STT V+ +  P TG SD TV
Sbjct: 546 FRWKGENVSTTEVEAILHPITGLSDATV 573


>AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical
           protein Y53F4B.1 protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 11  HCIIPRRVFIWHQRKTSTTTVDQLPKPATGPSDITV 46
           H  IPR++ + H+R T+T+T   L + +    DI+V
Sbjct: 333 HYRIPRKISV-HRRTTTTSTCISLSETSGSNQDISV 367


>U88314-6|AAF99886.1|  240|Caenorhabditis elegans Hypothetical
           protein C46H11.7 protein.
          Length = 240

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 15  PRRVFIWHQRKTSTTTVDQLPKPATGPSDITVR 47
           PR     +   TS+T+   L  P+TG SD T R
Sbjct: 123 PRTCGRCNSTTTSSTSCADLVNPSTGVSDCTAR 155


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 25  KTSTTTVDQLPKPATGPSDIT 45
           +TSTT VD L  P TG SD T
Sbjct: 95  RTSTTCVD-LTNPTTGVSDCT 114


>AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical
           protein T28C12.6 protein.
          Length = 333

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 15  PRRVFIWHQRKTSTTTVDQLPKP 37
           PRR  ++    T+ TT DQ P P
Sbjct: 281 PRRSVVFKSLSTAATTPDQCPDP 303


>Z81079-3|CAB03083.2|  588|Caenorhabditis elegans Hypothetical
          protein F39H11.3 protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/22 (36%), Positives = 17/22 (77%)

Query: 4  FMQMQHPHCIIPRRVFIWHQRK 25
          F +++HP+ I  +RVF+ +++K
Sbjct: 78 FRELRHPNLICLQRVFLTNEKK 99


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.137    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,442,504
Number of Sequences: 27539
Number of extensions: 43264
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 6
length of query: 55
length of database: 12,573,161
effective HSP length: 36
effective length of query: 19
effective length of database: 11,581,757
effective search space: 220053383
effective search space used: 220053383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)