GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000968-TA|BGIBMGA000968-PA|undefined
         (55 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    21   1.6  
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    21   1.6  
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    21   1.6  
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    21   1.6  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    21   1.6  
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    21   1.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   1.6  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    20   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   4.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      19   6.3  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    19   6.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    19   6.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    19   6.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    19   6.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          19   6.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    18   8.4  

>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 28  TTTVDQLPKPATGPSDITVR 47
           TTT D+L +    P D+ ++
Sbjct: 141 TTTSDELKRDIINPEDVMLK 160


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 28  TTTVDQLPKPATGPSDITVR 47
           TTT D+L +    P D+ ++
Sbjct: 141 TTTSDELKRDIINPEDVMLK 160


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 28  TTTVDQLPKPATGPSDITVR 47
           TTT D+L +    P D+ ++
Sbjct: 141 TTTSDELKRDIINPEDVMLK 160


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 28  TTTVDQLPKPATGPSDITVR 47
           TTT D+L +    P D+ ++
Sbjct: 141 TTTSDELKRDIINPEDVMLK 160


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 28  TTTVDQLPKPATGPSDITVR 47
           TTT D+L +    P D+ ++
Sbjct: 141 TTTSDELKRDIINPEDVMLK 160


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 28  TTTVDQLPKPATGPSDITVR 47
           TTT D+L +    P D+ ++
Sbjct: 141 TTTSDELKRDIINPEDVMLK 160


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 28  TTTVDQLPKPATGPSDITVR 47
           TTT D+L +    P D+ ++
Sbjct: 141 TTTSDELKRDIINPEDVMLK 160


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 28  TTTVDQLPKPATGPSDITVR 47
           TTT D+L +    P D+ ++
Sbjct: 141 TTTSDELKRGIINPEDVMLK 160


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 7   MQHPHCIIPRRV 18
           + HP+C I R+V
Sbjct: 400 LHHPNCKINRKV 411


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 30  TVDQLPKPATGPSDITVRHLIVY 52
           T ++L  P      +TV  LI Y
Sbjct: 439 TTEELNFPGVSIESVTVDKLITY 461


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 27  STTTVDQLPKPATGPSDITV 46
           STTT  ++ +    P D+ V
Sbjct: 132 STTTTVEVKRDIINPEDVIV 151


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 27  STTTVDQLPKPATGPSDITV 46
           STTT  ++ +    P D+ V
Sbjct: 143 STTTTVEVKRDIINPEDVIV 162


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 27  STTTVDQLPKPATGPSDITV 46
           STTT  ++ +    P D+ V
Sbjct: 143 STTTTVEVKRDIINPEDVIV 162


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 27  STTTVDQLPKPATGPSDITV 46
           STTT  ++ +    P D+ V
Sbjct: 132 STTTTVEVKRDIINPEDVIV 151


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 30 TVDQLPKPATGPSDITVRHLIVY 52
          T ++L  P      +TV  LI Y
Sbjct: 65 TTEELNFPGVSIESVTVDKLITY 87


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 27  STTTVDQLPKPATGPSDI 44
           STTT  ++ +    P D+
Sbjct: 143 STTTTAEVKRDTINPEDV 160


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.137    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424
Number of Sequences: 429
Number of extensions: 490
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 55
length of database: 140,377
effective HSP length: 35
effective length of query: 20
effective length of database: 125,362
effective search space:  2507240
effective search space used:  2507240
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.4 bits)
S2: 35 (18.2 bits)