Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000967-TA|BGIBMGA000967-PA|undefined
         (84 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenas...    29   0.38 
At2g40935.2 68415.m05054 expressed protein low similarity to PGP...    28   0.67 
At2g40935.1 68415.m05053 expressed protein low similarity to PGP...    28   0.67 
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    27   2.0  
At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenas...    26   3.6  
At3g60310.1 68416.m06741 expressed protein                             25   8.3  

>At1g12900.1 68414.m01498 glyceraldehyde 3-phosphate dehydrogenase,
           chloroplast, putative / NADP-dependent
           glyceraldehydephosphate dehydrogenase, putative similar
           to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A,
           chloroplast precursor (EC 1.2.1.13) (NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A)
           {Arabidopsis thaliana}; contains Pfam profiles PF02800:
           Glyceraldehyde 3-phosphate dehydrogenase C-terminal
           domain, PF00044: Glyceraldehyde 3-phosphate
           dehydrogenase NAD binding domain
          Length = 399

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 16  IQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAYLKIVD 73
           +Q+  K V  +A G   I  Y+  VNA L     + I + +C+ +  AP   ++K++D
Sbjct: 175 LQAGAKKVLITAPGKGDIPTYVVGVNAELYSHEDTIISNASCTTNCLAP---FVKVLD 229


>At2g40935.2 68415.m05054 expressed protein low similarity to
           PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
           profile PF04749: Protein of unknown function, DUF614
          Length = 166

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 12  LCEIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQS 50
           LC I Q + + +   +SG+ P+D  + + NA L + M+S
Sbjct: 127 LCAICQ-EYREIREQSSGSYPLDMKMAITNAPLAQTMES 164



 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 31  APIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAYLKIVDAALCEIIQS 82
           AP   ++      LC I Q + + +   +SG+ P+D  + I +A L + ++S
Sbjct: 114 APCGDFVTHFFCHLCAICQ-EYREIREQSSGSYPLDMKMAITNAPLAQTMES 164


>At2g40935.1 68415.m05053 expressed protein low similarity to
           PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam
           profile PF04749: Protein of unknown function, DUF614
          Length = 190

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 12  LCEIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQS 50
           LC I Q + + +   +SG+ P+D  + + NA L + M+S
Sbjct: 151 LCAICQ-EYREIREQSSGSYPLDMKMAITNAPLAQTMES 188



 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 31  APIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAYLKIVDAALCEIIQS 82
           AP   ++      LC I Q + + +   +SG+ P+D  + I +A L + ++S
Sbjct: 138 APCGDFVTHFFCHLCAICQ-EYREIREQSSGSYPLDMKMAITNAPLAQTMES 188


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 32  PIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAYLKIVDAA 75
           PID+      A  C+  Q +  S++C A  ++PM+   +  DA+
Sbjct: 808 PIDSVEAKDQAIECQSSQLQSTSISCQAESSSPMEIDSESSDAS 851


>At3g26650.1 68416.m03330 glyceraldehyde 3-phosphate dehydrogenase
           A, chloroplast (GAPA) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit A
           identical to SP|P25856 Glyceraldehyde 3-phosphate
           dehydrogenase A, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit A) {Arabidopsis thaliana}
          Length = 396

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 16  IQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAYLKIVD 73
           I++  K V  +A G   I  Y+  VNA      +  I + +C+ +  AP   ++K++D
Sbjct: 172 IEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAP---FVKVLD 226


>At3g60310.1 68416.m06741 expressed protein 
          Length = 687

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 11 ALCEIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKI----KSVACSASGAA 63
          A+ E+ +S    + C  SG   +DA L ++     ++  S I    +++ C+ S ++
Sbjct: 41 AISELNRSLTLDIGCEDSGVRVVDAALSIMCFKAPQVFDSAIEFMVRTIVCALSSSS 97


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,325
Number of Sequences: 28952
Number of extensions: 42832
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 9
length of query: 84
length of database: 12,070,560
effective HSP length: 63
effective length of query: 21
effective length of database: 10,246,584
effective search space: 215178264
effective search space used: 215178264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)