GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000967-TA|BGIBMGA000967-PA|undefined
         (84 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   4.1  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    20   4.1  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    19   5.5  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    19   9.6  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 66  DAYLKIVDAALCEIIQS 82
           DAY  +    LC++IQS
Sbjct: 254 DAYGNVKIPVLCKLIQS 270



 Score = 19.0 bits (37), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 2   DAYLKMVDAALCEIIQS 18
           DAY  +    LC++IQS
Sbjct: 254 DAYGNVKIPVLCKLIQS 270



 Score = 19.0 bits (37), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 34  DAYLKVVNAALCEIMQS 50
           DAY  V    LC+++QS
Sbjct: 254 DAYGNVKIPVLCKLIQS 270


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 39  VVNAALCEIMQSKIKSVAC 57
           VV  ++ ++MQ+K++  AC
Sbjct: 242 VVVTSVLKLMQNKLEITAC 260


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 4/12 (33%), Positives = 11/12 (91%)

Query: 12  LCEIIQSKIKSV 23
           +C++I+ K+K++
Sbjct: 451 ICDLIEQKVKNI 462


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 18.6 bits (36), Expect = 9.6
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 53  KSVACSASGAAPMDAYLKIVDAALCEI 79
           +S+  + + + PM+     +D  LC I
Sbjct: 157 RSIRLTITASCPMNLQYLPMDRQLCHI 183


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997
Number of Sequences: 317
Number of extensions: 382
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 84
length of database: 114,650
effective HSP length: 46
effective length of query: 38
effective length of database: 100,068
effective search space:  3802584
effective search space used:  3802584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.6 bits)
S2: 36 (18.6 bits)