GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000967-TA|BGIBMGA000967-PA|undefined
         (84 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    24   3.3  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    23   5.8  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    23   5.8  

>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 3   AYLKMVDAALCEIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSASGA 62
           A L+ VDA   +++   ++       G+    AY K  N     +   K+K+V  +A+G 
Sbjct: 205 ATLENVDAYASKLLSFGVRKAVIITLGSQ--GAYYKSANGESALVSACKVKAVDTTAAGD 262

Query: 63  APMDAY 68
             + A+
Sbjct: 263 TFIGAF 268


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 7   MVDAALCEIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIK----SVACSASGA 62
           M+ +ALC   Q+ I  + C A         + +VN  + +I   + +     +  +A GA
Sbjct: 172 MLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISDITPLRTRPMYSGILATAWGA 231

Query: 63  APMDAYLKIVDAALCE 78
           A +     I+  A+C+
Sbjct: 232 ALVAG--PIIGGAICQ 245


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 26  SASGAAPIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAYL 69
           SAS   P+D Y+  V  ++  ++ S+  S      G    D YL
Sbjct: 530 SASSLMPVDIYIGGVEHSILHLLYSRFFSKFMKDIGLWNGDKYL 573


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,485
Number of Sequences: 5004
Number of extensions: 7990
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 4
length of query: 84
length of database: 2,362,478
effective HSP length: 60
effective length of query: 24
effective length of database: 2,062,238
effective search space: 49493712
effective search space used: 49493712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)