Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000967-TA|BGIBMGA000967-PA|undefined
(84 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1464 + 30339369-30340220 29 0.35
05_01_0296 - 2303344-2303395,2303732-2304180,2304287-2304355,230... 27 1.4
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229... 27 1.4
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 27 1.9
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 27 2.5
08_02_1235 + 25443721-25444146 26 3.3
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 26 3.3
07_01_0931 - 7828489-7829088 25 7.6
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507... 25 7.6
03_05_0437 - 24293236-24294120 25 7.6
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 25 7.6
02_05_0125 + 26046448-26046654,26046754-26047149,26047557-26047763 25 7.6
>06_03_1464 + 30339369-30340220
Length = 283
Score = 29.5 bits (63), Expect = 0.35
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 20 IKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAYLKIVDA 74
++S A + A A+L ++AAL E++ A SA+ +DA+L++ DA
Sbjct: 56 VRSWAHDPTSVASGLAHLDALHAALGELLDLPEAQAALSAANDRLLDAFLRLADA 110
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 3 AYLKMVDAALCEIIQSKIKSVACSASGAAPIDAYLKVVNA 42
A+L + AAL E++ A SA+ +DA+L++ +A
Sbjct: 71 AHLDALHAALGELLDLPEAQAALSAANDRLLDAFLRLADA 110
>05_01_0296 -
2303344-2303395,2303732-2304180,2304287-2304355,
2304539-2306546,2311181-2311425
Length = 940
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 48 MQSKIKSVACSASGAAPMDAYLKIVDAALCEIIQSKI 84
M +K+ + SG D Y+K++DAAL +++++ +
Sbjct: 721 MHAKLLQNLRAYSGPKEFDEYMKLIDAALPKVLKAVV 757
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 28 SGAAPIDAYLKVVNAALCEIMQSKIKSVA 56
SG D Y+K+++AAL +++++ + +VA
Sbjct: 733 SGPKEFDEYMKLIDAALPKVLKAVVDAVA 761
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 2 DAYLKMVDAALCEIIQSKIKSVA 24
D Y+K++DAAL +++++ + +VA
Sbjct: 739 DEYMKLIDAALPKVLKAVVDAVA 761
>05_01_0294 -
2291175-2291223,2291591-2292039,2292143-2292211,
2292397-2292449,2292492-2294478
Length = 868
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 27 ASGAAPIDAYLKVVNAALCEIMQSKIKSVA 56
A+G D Y+K+++AAL +++++ + +VA
Sbjct: 661 ATGPKEFDEYMKLIDAALPKVLKAVVDAVA 690
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 59 ASGAAPMDAYLKIVDAALCEIIQSKI 84
A+G D Y+K++DAAL +++++ +
Sbjct: 661 ATGPKEFDEYMKLIDAALPKVLKAVV 686
Score = 26.6 bits (56), Expect = 2.5
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 2 DAYLKMVDAALCEIIQSKIKSVA 24
D Y+K++DAAL +++++ + +VA
Sbjct: 668 DEYMKLIDAALPKVLKAVVDAVA 690
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 16 IQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAYLKIVD 73
IQ+ K V +A G I Y+ VNA + I + +C+ + AP ++KI+D
Sbjct: 178 IQAGAKKVLITAPGKGDIPTYVVGVNADQYSPDEPIISNASCTTNCLAP---FVKILD 232
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1 MDAYLKMVDAALCEIIQSKIKSVACSASGAAPIDAYLKV 39
M+ + KM + CE I KI V S + D++LKV
Sbjct: 1210 MNTFFKMACQSSCEGIMLKILDVDAGYSASKRCDSWLKV 1248
>08_02_1235 + 25443721-25444146
Length = 141
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 9 DAALCEIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSASGA 62
+AAL E+I+ K+ + +G A DA +V + E+ Q+K A GA
Sbjct: 62 EAALSELIERKVAEATEACAGEAAGDAGCRVAWDEVEEVSQAKADLRRRIAQGA 115
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 18 SKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVAC 57
SK+KS AC S +D L+ L ++ Q ++ + C
Sbjct: 5 SKVKSEACHLSQRWALDTDLREQEGGLLQMNQPEVNGLLC 44
>07_01_0931 - 7828489-7829088
Length = 199
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 11 ALCEIIQSKIKSVACSASGAAPIDAYLKVVN 41
AL ++Q K+ + C A GAA A + +V+
Sbjct: 150 ALVNVVQVKLGRLGCGAGGAAAWGAVVPLVS 180
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 43 ALCEIMQSKIKSVACSASGAAPMDAYLKIV 72
AL ++Q K+ + C A GAA A + +V
Sbjct: 150 ALVNVVQVKLGRLGCGAGGAAAWGAVVPLV 179
>06_03_1406 -
29949367-29949556,29949753-29949837,29950625-29950791,
29951232-29952049
Length = 419
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 5 LKMVDAALCEIIQSKIKSVACSASGAAPIDAY 36
L M D A +I S S AS A P+DAY
Sbjct: 32 LSMADLAPVQIGPSSPSSPMSPASPATPVDAY 63
>03_05_0437 - 24293236-24294120
Length = 294
Score = 25.0 bits (52), Expect = 7.6
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 9 DAALCEIIQSKIKSVACSASGAA-PIDAYLKVVNAALCEIMQSKIKSVACSASGAAPM 65
D A+ + +K +A AA P+ L+ + C + + ++ ++ GAAP+
Sbjct: 179 DLAVLRVTSGSVKPEDAAAMAAASPLRGRLRSLCLDRCYLPRQELLAILAGCGGAAPL 236
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 7 MVDAALCEIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVA-CSASGAA 63
+V+ + + +ACSA +A ++V +L I+ + S+A C+A G +
Sbjct: 379 LVERGVLGLYGGLASKIACSAPISAIYTLTYEIVKGSLLPILPKEYHSIAHCTAGGCS 436
>02_05_0125 +
26046448-26046654,26046754-26047149,26047557-26047763
Length = 269
Score = 25.0 bits (52), Expect = 7.6
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 13 CEIIQSKIKSVACSASGAAPIDAY-LKVVNAALCEIMQSKIKSVACSASGAAPMDAYLKI 71
C++ ++ SV C A AA DA +V A + + SASG +P
Sbjct: 5 CDVCAAEAASVFCCADEAALCDACDHRVHRANKLAGKHRRFSLLNPSASGRSPTS----- 59
Query: 72 VDAALCEIIQSK 83
A LC+I Q K
Sbjct: 60 TTAPLCDICQEK 71
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,728
Number of Sequences: 37544
Number of extensions: 59983
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 155
Number of HSP's gapped (non-prelim): 22
length of query: 84
length of database: 14,793,348
effective HSP length: 63
effective length of query: 21
effective length of database: 12,428,076
effective search space: 260989596
effective search space used: 260989596
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
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