GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000967-TA|BGIBMGA000967-PA|undefined
         (84 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    21   4.5  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    21   7.8  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 21  KSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSASGAAPMDAY 68
           KSVA  A+ + PI   L+     +       I  ++C A    P + Y
Sbjct: 74  KSVAVVATSSYPIQRVLRSAVPGIVAAQIGGIVFISCYARPRRPEEDY 121


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
          binding protein protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 13 CEIIQSKIKSVACSASGAAPIDAYLKVVNAALCE 46
          C +I       A   S A P++A   +++ A C+
Sbjct: 3  CAVITRDFAMAAICFSCAEPLEATGCIISCAYCD 36


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,022
Number of Sequences: 2123
Number of extensions: 1842
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 84
length of database: 516,269
effective HSP length: 53
effective length of query: 31
effective length of database: 403,750
effective search space: 12516250
effective search space used: 12516250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)