GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000967-TA|BGIBMGA000967-PA|undefined
         (84 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    27   2.2  
CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical ...    27   2.2  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    27   2.2  
AF098988-11|AAK73863.2|  735|Caenorhabditis elegans Suppressor o...    27   2.2  
AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    25   6.6  

>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 13  CEIIQSKIKSVACSASGAAPIDAYLKVVNAALCE-IMQSKIKSVACSASG 61
           C+I  ++  ++ C +    PID+ LK       E   Q + KS+A +A G
Sbjct: 586 CQIEDTRCGTLHCHSGSITPIDSSLKAFTFHFTENSHQIQCKSIASAAVG 635


>CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical
           protein C50E10.4 protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 14  EIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSA 59
           +I   K +   CS     P ++ +KV+N A  E++  K+  +  S+
Sbjct: 92  DIFAHKFEKAVCSRQTFEPTNSIIKVLNTAEEEMLHEKVVPLPVSS 137


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 13  CEIIQSKIKSVACSASGAAPIDAYLKVVNAALCE-IMQSKIKSVACSASG 61
           C+I  ++  ++ C +    PID+ LK       E   Q + KS+A +A G
Sbjct: 586 CQIEDTRCGTLHCHSGSITPIDSSLKAFTFHFTENSHQIQCKSIASAAVG 635


>AF098988-11|AAK73863.2|  735|Caenorhabditis elegans Suppressor of
           pal-1 protein 2 protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 14  EIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVACSA 59
           +I   K +   CS     P ++ +KV+N A  E++  K+  +  S+
Sbjct: 92  DIFAHKFEKAVCSRQTFEPTNSIIKVLNTAEEEMLHEKVVPLPVSS 137


>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 2   DAYLKMVDAALCEIIQSKIKSVACSASGAAPIDAYLKVVNAALCEIMQSKIKSVA 56
           DA+ ++V+A     + S I S  C  S    +DA       +L  + Q+ ++ +A
Sbjct: 494 DAFKRIVEALASGYLYSAILSDPCETSRPNVLDALTDEQKHSLTALAQNFVRQIA 548


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,446
Number of Sequences: 27539
Number of extensions: 46598
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 8
length of query: 84
length of database: 12,573,161
effective HSP length: 63
effective length of query: 21
effective length of database: 10,838,204
effective search space: 227602284
effective search space used: 227602284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)