GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000966-TA|BGIBMGA000966-PA|IPR003591|Leucine-rich
repeat, typical subtype, IPR001611|Leucine-rich repeat
         (454 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    53   4e-09

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 53.2 bits (122), Expect = 4e-09
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 3/150 (2%)

Query: 122 QLSLSRADLRVLRSDAFAHLRQLRRLALDACNLTRIRPFAFRG-LPR-LRELYIQHTPLA 179
           +L LS   LR +  ++F  LR L+++ L    +  I    F+G + R L E+Y     + 
Sbjct: 46  ELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDLTEVYFSFNSVR 105

Query: 180 TVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIKRILVHAFSGLND 239
            V    FA L  +  I L  NRI  +E  AF     +  ++L+ N I  I    F  L +
Sbjct: 106 NVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYETFQNLPE 165

Query: 240 VGQIELP-SGIRTIEPQAFAGLEGIGVLEL 268
           +  ++L  + I +++   F  +  +G+  +
Sbjct: 166 LEDLDLAYNSISSLDFNIFDQVGSLGMFHV 195



 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 6/202 (2%)

Query: 161 AFRGLPRLRELYIQHTPLATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINL-- 218
           A + L RL EL + +  L  V   +F  L+++  + L  N I  I    F G    +L  
Sbjct: 37  AIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDLTE 96

Query: 219 ISLRNNPIKRILVHAFSGLNDVGQIELPSG-IRTIEPQAFAGLEGIGVLELAFMDLPSLL 277
           +    N ++ +  H F+ L  + QI L    I ++E +AF  L+ +  L L    + ++ 
Sbjct: 97  VYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIA 156

Query: 278 PDTFHGLIRVGRLSLRESDLGIIKVGSFDGLQHVDTLEICNNKIDGIEELSLVQNNSVRV 337
            +TF  L  +  L L  + +  +    FD    V +L + +  +   + ++LV   SV  
Sbjct: 157 YETFQNLPELEDLDLAYNSISSLDFNIFD---QVGSLGMFHVNMSHNKLINLVVAPSVPF 213

Query: 338 FKLTGNHMLESPEAVVLEVENI 359
            + TG   L++ + + L   NI
Sbjct: 214 EQDTGLGGLQNIKVLDLSFNNI 235



 Score = 47.6 bits (108), Expect = 2e-07
 Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 6/183 (3%)

Query: 168 LRELYIQHTPLATVDSF---AFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNN 224
           L  L + H   ++V +F   A   L  +  + L++NR+  +   +F     +  + L++N
Sbjct: 17  LLTLKLTHALSSSVQNFPSDAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDN 76

Query: 225 PIKRILVHAFSG--LNDVGQIELP-SGIRTIEPQAFAGLEGIGVLELAFMDLPSLLPDTF 281
            I+ I    F G    D+ ++    + +R ++   FA L  +  + L    + SL    F
Sbjct: 77  TIEMIHRGTFQGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAF 136

Query: 282 HGLIRVGRLSLRESDLGIIKVGSFDGLQHVDTLEICNNKIDGIEELSLVQNNSVRVFKLT 341
             L  + RL+L+ + +  I   +F  L  ++ L++  N I  ++     Q  S+ +F + 
Sbjct: 137 MNLKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMFHVN 196

Query: 342 GNH 344
            +H
Sbjct: 197 MSH 199



 Score = 46.8 bits (106), Expect = 3e-07
 Identities = 49/254 (19%), Positives = 105/254 (41%), Gaps = 14/254 (5%)

Query: 110 RGVPSG-LSPSVTQLSLSRADLRVLRSDAFAHLRQLRRLALDACNLTRIRPFAFRGLPRL 168
           RG   G +   +T++  S   +R ++   FA L QL ++ LD   +  +   AF  L  L
Sbjct: 83  RGTFQGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSL 142

Query: 169 RELYIQHTPLATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIKR 228
           + L ++   +AT+    F  L  +  + L +N I+ ++   F     + +          
Sbjct: 143 KRLNLKGNKIATIAYETFQNLPELEDLDLAYNSISSLDFNIFDQVGSLGMF--------- 193

Query: 229 ILVHAFSGLNDVGQIELPSGIRTIEPQAFAGLEGIGVLELAFMDLPSLLPDTFHGL-IRV 287
              H     N +  + +   +   +     GL+ I VL+L+F ++ S+    F  + + +
Sbjct: 194 ---HVNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFRPVELSL 250

Query: 288 GRLSLRESDLGIIKVGSFDGLQHVDTLEICNNKIDGIEELSLVQNNSVRVFKLTGNHMLE 347
            +L L  + L       F  + H+  L++ +N +  ++  +      ++    + N + E
Sbjct: 251 MQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRISE 310

Query: 348 SPEAVVLEVENIII 361
            P  +   + N+ I
Sbjct: 311 IPNDLFRFLGNLRI 324



 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 43/198 (21%), Positives = 87/198 (43%), Gaps = 7/198 (3%)

Query: 119 SVTQLSLSRADLRVLRSDAFAHLRQLRRLALDACNLTRIRPFAFRGLPRLRELYIQHTPL 178
           S+ QL L    L     D F ++  L+ L L   +L  +    FR   +L+ L   H  +
Sbjct: 249 SLMQLYLGHNKLLNATKDLFGNMPHLQVLDLSHNSLYELDFDTFRNTKKLQWLDTSHNRI 308

Query: 179 ATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIKRILVHAFSGLN 238
           + + +  F  L N+  +  +HNR+  +    F  T  +  + + +N + ++ + + S  +
Sbjct: 309 SEIPNDLFRFLGNLRIVDFSHNRLRSLPDNLFRETG-LERLDVSHNLLGKLPLTSLSLAS 367

Query: 239 DVGQIELPSGIRTIEPQAFAG----LEGIGVLELAFMDLPSLLPDTFHGLIRVGRLSLRE 294
                EL     +I   +  G     + +  L+L++  L  +   TF G+ R+  L+L  
Sbjct: 368 AQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFKGIPRLASLNLGH 427

Query: 295 SDLGIIKVG--SFDGLQH 310
           +    +++   SF GL++
Sbjct: 428 NSQLTLEINGLSFQGLEY 445



 Score = 38.3 bits (85), Expect = 1e-04
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 105 NSAALRGVPSGLSPSVTQLSLSRADLRVLRSDAFAHLRQLRRLALDACNLTRIRPFAFRG 164
           ++ +L  VP+  +P++  LSL+   L  +  +   ++  LR L LD  +L+ + P     
Sbjct: 453 DNVSLSQVPALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLSAV-PIVTHS 511

Query: 165 LPRLRELYIQHTPLATVDSFA-FAALQNITSIVLTHNRIAQIESYAF 210
           L  LR L ++  P+ T+ + +   A   +  + L +  +  +ES AF
Sbjct: 512 LTELRHLSLEGNPITTLSNTSLLGAANQLEELNLKNIDLTVLESGAF 558


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,148
Number of Sequences: 317
Number of extensions: 3268
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 454
length of database: 114,650
effective HSP length: 59
effective length of query: 395
effective length of database: 95,947
effective search space: 37899065
effective search space used: 37899065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 45 (22.2 bits)