BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000966-TA|BGIBMGA000966-PA|IPR003591|Leucine-rich repeat, typical subtype, IPR001611|Leucine-rich repeat (454 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 37 0.005 SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 34 0.036 SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 29 1.3 SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 29 1.3 SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 28 2.3 SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 28 3.1 SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 26 9.5 >SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1045 Score = 37.1 bits (82), Expect = 0.005 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 10/101 (9%) Query: 265 VLELAFMDLPSLLPDTFHGLIRVGRLSLRESDLGIIKVGSFDGLQHVD---TLEICNNKI 321 +L L ++D+ + GL + + LRE + + S DG+QH+D L CNN+ Sbjct: 667 LLNLQYLDISYNQLEDLTGLSSL--IHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNR- 723 Query: 322 DGIEELSLVQNNSVRVFK-LTGNHMLESPEAVVLEVENIII 361 I+ELS +N R+ + L GN+ +E E + ++N+++ Sbjct: 724 --IKELSFTNSNLHRLEELLLGNNEIEEIEE-ISSLQNLMV 761 Score = 26.6 bits (56), Expect = 7.2 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%) Query: 283 GLIRVGRLSLRESDLGIIKVGSFDGLQHVDTLEICNNKIDGIEELSLVQNNSVRVFKLTG 342 GL+++ + R +L L ++ L + NN+I+ IEE+S +QN + V +L Sbjct: 713 GLLKLSACNNRIKELSFTN----SNLHRLEELLLGNNEIEEIEEISSLQN--LMVLQLDN 766 Query: 343 NHM 345 N + Sbjct: 767 NKL 769 Score = 26.6 bits (56), Expect = 7.2 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 168 LRELYIQHTPLATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIK 227 +R L + + L V + ++ N+ + L+HN I+ IES I+ + L N IK Sbjct: 869 VRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDIES--LKPLQMIHRLYLVGNRIK 926 Query: 228 RI 229 ++ Sbjct: 927 KM 928 >SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccharomyces pombe|chr 1|||Manual Length = 621 Score = 34.3 bits (75), Expect = 0.036 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 123 LSLSRADLRVLRSDAFAHLRQLRRLALDACNLTRIRPFAFRGLPRLRELYIQHTPLATVD 182 L S L+ + + F L+ L L L LT I P+A LP+L L + + Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-PYALGELPQLCSLNLASNKITGCR 395 Query: 183 SFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIKRIL 230 +F +L ++ +VL+ N + + + + +R+N I ++ Sbjct: 396 TFYHISLSHLQILVLSRNHLTSLS--GLENVPSLEKLDIRDNSITDVV 441 >SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pombe|chr 2|||Manual Length = 1692 Score = 29.1 bits (62), Expect = 1.3 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 16/133 (12%) Query: 129 DLRVLRSDAFAHLRQLRRLALDACNLTRIRPFAFRGLPR--LRELYIQHTPLATVDSFAF 186 +LR R LRQL L + ++ + P F GL R L+EL I + L + + Sbjct: 463 NLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFL-PHST 521 Query: 187 AALQNITSIVLTHN----------RIAQIESYAFAGTNFINLISLRNNPIKRILVHAFSG 236 L N+T + L++N ++Q+E+ F+ N ++ IS + + + L H + Sbjct: 522 RYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFS-HNLLSQISSKIGSLVK-LKHLYLQ 579 Query: 237 LNDVGQIELPSGI 249 ND+ LP I Sbjct: 580 FNDLSN-RLPQEI 591 Score = 26.2 bits (55), Expect = 9.5 Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 165 LPRLRELYIQHTPLATVDSFAFAALQNITSIVLTHNRIAQIES 207 L +L+ LY+Q L+ L+N+ +I L++N I I S Sbjct: 570 LVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNIAS 612 >SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22 |Schizosaccharomyces pombe|chr 1|||Manual Length = 332 Score = 29.1 bits (62), Expect = 1.3 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 15/160 (9%) Query: 178 LATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIKRILVHAFSGL 237 + ++ S +N+ S+ L N+I +IES T + L +N I RI + Sbjct: 50 IQSMASLGLERFKNLQSLCLRQNQIKKIESVPETLTE----LDLYDNLIVRI--ENLDNV 103 Query: 238 NDVGQIELP-SGIRTIEP-QAFAGLEGIGVLELAFMDLPSLLPDTFHGLIRVGRLSLRES 295 ++ ++L + I+TI GLE + ++ + +L GL R+ L L + Sbjct: 104 KNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENL-----EGLDRLTNLELGGN 158 Query: 296 DLGIIKVGSFDGLQHVDTLEICNNKIDGIEELSLVQNNSV 335 + +I+ + D L +++ L + NKI E +Q S+ Sbjct: 159 KIRVIE--NLDTLVNLEKLWVGKNKITKFENFEKLQKLSL 196 >SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces pombe|chr 2|||Manual Length = 506 Score = 28.3 bits (60), Expect = 2.3 Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 102 VVCNSAALRGVPSGLSPSVTQLSLSRADLRVLRSDAFAHLRQLRRLALDACNLTRIRP 159 ++ N+A G+ + S S++ + S ++ ++ + HLR + L A +T+ +P Sbjct: 337 MLINNAQAAGMMAFSSSSISAIEHSAKIIQAIKEENVTHLRICEQYGLSASQITKSKP 394 >SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1|||Manual Length = 753 Score = 27.9 bits (59), Expect = 3.1 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 11/123 (8%) Query: 178 LATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFIN----LISLRNNPIKRILVHA 233 L T +S + TS+ T + ES A + + IN I R N IK ++ Sbjct: 264 LETDESLSRTISYATTSLPSTPGKRLSKESLAMSEASSINPEYKRIKKRANLIKELVTTE 323 Query: 234 FSGLNDVGQIELPSGIRTIEPQAFAGLEGIGVLELAFMDLPSLLPDT--FHG-LIRVGRL 290 + LND+ I+ G+R E A ++ + F D+ SLL T FH L + G Sbjct: 324 AAYLNDLIAIQQSYGLRVKECSALNPVDA----QTVFGDIESLLTFTVEFHSRLYQAGEG 379 Query: 291 SLR 293 S R Sbjct: 380 SWR 382 >SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schizosaccharomyces pombe|chr 2|||Manual Length = 1107 Score = 26.2 bits (55), Expect = 9.5 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Query: 172 YIQHTPLATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNP 225 YI +DS A Q + I + H I + E+ TN IN IS RNNP Sbjct: 826 YIIRQTFDKIDSLRGLAYQALEQIRV-HYLIRRCEAL----TNIINRISFRNNP 874 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.324 0.138 0.407 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,763,353 Number of Sequences: 5004 Number of extensions: 68168 Number of successful extensions: 178 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 169 Number of HSP's gapped (non-prelim): 16 length of query: 454 length of database: 2,362,478 effective HSP length: 75 effective length of query: 379 effective length of database: 1,987,178 effective search space: 753140462 effective search space used: 753140462 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.5 bits) S2: 55 (26.2 bits)
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