GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000966-TA|BGIBMGA000966-PA|IPR003591|Leucine-rich
repeat, typical subtype, IPR001611|Leucine-rich repeat
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    37   0.005
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    34   0.036
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   1.3  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    29   1.3  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   2.3  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    28   3.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   9.5  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 265 VLELAFMDLPSLLPDTFHGLIRVGRLSLRESDLGIIKVGSFDGLQHVD---TLEICNNKI 321
           +L L ++D+     +   GL  +  + LRE  +    + S DG+QH+D    L  CNN+ 
Sbjct: 667 LLNLQYLDISYNQLEDLTGLSSL--IHLRELKVDSNHLWSLDGIQHLDGLLKLSACNNR- 723

Query: 322 DGIEELSLVQNNSVRVFK-LTGNHMLESPEAVVLEVENIII 361
             I+ELS   +N  R+ + L GN+ +E  E  +  ++N+++
Sbjct: 724 --IKELSFTNSNLHRLEELLLGNNEIEEIEE-ISSLQNLMV 761



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 283 GLIRVGRLSLRESDLGIIKVGSFDGLQHVDTLEICNNKIDGIEELSLVQNNSVRVFKLTG 342
           GL+++   + R  +L          L  ++ L + NN+I+ IEE+S +QN  + V +L  
Sbjct: 713 GLLKLSACNNRIKELSFTN----SNLHRLEELLLGNNEIEEIEEISSLQN--LMVLQLDN 766

Query: 343 NHM 345
           N +
Sbjct: 767 NKL 769



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 168 LRELYIQHTPLATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIK 227
           +R L + +  L  V  +   ++ N+  + L+HN I+ IES        I+ + L  N IK
Sbjct: 869 VRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDIES--LKPLQMIHRLYLVGNRIK 926

Query: 228 RI 229
           ++
Sbjct: 927 KM 928


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 34.3 bits (75), Expect = 0.036
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 3/108 (2%)

Query: 123 LSLSRADLRVLRSDAFAHLRQLRRLALDACNLTRIRPFAFRGLPRLRELYIQHTPLATVD 182
           L  S   L+ +  + F  L+ L  L L    LT I P+A   LP+L  L +    +    
Sbjct: 337 LRCSSCKLKSIPKNVFLSLQSLVSLDLSGNELTEI-PYALGELPQLCSLNLASNKITGCR 395

Query: 183 SFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIKRIL 230
           +F   +L ++  +VL+ N +  +          +  + +R+N I  ++
Sbjct: 396 TFYHISLSHLQILVLSRNHLTSLS--GLENVPSLEKLDIRDNSITDVV 441


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 16/133 (12%)

Query: 129 DLRVLRSDAFAHLRQLRRLALDACNLTRIRPFAFRGLPR--LRELYIQHTPLATVDSFAF 186
           +LR  R      LRQL  L +   ++  + P  F GL R  L+EL I +  L  +   + 
Sbjct: 463 NLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFL-PHST 521

Query: 187 AALQNITSIVLTHN----------RIAQIESYAFAGTNFINLISLRNNPIKRILVHAFSG 236
             L N+T + L++N           ++Q+E+  F+  N ++ IS +   + + L H +  
Sbjct: 522 RYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFS-HNLLSQISSKIGSLVK-LKHLYLQ 579

Query: 237 LNDVGQIELPSGI 249
            ND+    LP  I
Sbjct: 580 FNDLSN-RLPQEI 591



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 165 LPRLRELYIQHTPLATVDSFAFAALQNITSIVLTHNRIAQIES 207
           L +L+ LY+Q   L+         L+N+ +I L++N I  I S
Sbjct: 570 LVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNIAS 612


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 15/160 (9%)

Query: 178 LATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNPIKRILVHAFSGL 237
           + ++ S      +N+ S+ L  N+I +IES     T     + L +N I RI       +
Sbjct: 50  IQSMASLGLERFKNLQSLCLRQNQIKKIESVPETLTE----LDLYDNLIVRI--ENLDNV 103

Query: 238 NDVGQIELP-SGIRTIEP-QAFAGLEGIGVLELAFMDLPSLLPDTFHGLIRVGRLSLRES 295
            ++  ++L  + I+TI       GLE +  ++     + +L      GL R+  L L  +
Sbjct: 104 KNLTYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIENL-----EGLDRLTNLELGGN 158

Query: 296 DLGIIKVGSFDGLQHVDTLEICNNKIDGIEELSLVQNNSV 335
            + +I+  + D L +++ L +  NKI   E    +Q  S+
Sbjct: 159 KIRVIE--NLDTLVNLEKLWVGKNKITKFENFEKLQKLSL 196


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 102 VVCNSAALRGVPSGLSPSVTQLSLSRADLRVLRSDAFAHLRQLRRLALDACNLTRIRP 159
           ++ N+A   G+ +  S S++ +  S   ++ ++ +   HLR   +  L A  +T+ +P
Sbjct: 337 MLINNAQAAGMMAFSSSSISAIEHSAKIIQAIKEENVTHLRICEQYGLSASQITKSKP 394


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 178 LATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFIN----LISLRNNPIKRILVHA 233
           L T +S +       TS+  T  +    ES A +  + IN     I  R N IK ++   
Sbjct: 264 LETDESLSRTISYATTSLPSTPGKRLSKESLAMSEASSINPEYKRIKKRANLIKELVTTE 323

Query: 234 FSGLNDVGQIELPSGIRTIEPQAFAGLEGIGVLELAFMDLPSLLPDT--FHG-LIRVGRL 290
            + LND+  I+   G+R  E  A   ++     +  F D+ SLL  T  FH  L + G  
Sbjct: 324 AAYLNDLIAIQQSYGLRVKECSALNPVDA----QTVFGDIESLLTFTVEFHSRLYQAGEG 379

Query: 291 SLR 293
           S R
Sbjct: 380 SWR 382


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 172 YIQHTPLATVDSFAFAALQNITSIVLTHNRIAQIESYAFAGTNFINLISLRNNP 225
           YI       +DS    A Q +  I + H  I + E+     TN IN IS RNNP
Sbjct: 826 YIIRQTFDKIDSLRGLAYQALEQIRV-HYLIRRCEAL----TNIINRISFRNNP 874


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,353
Number of Sequences: 5004
Number of extensions: 68168
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 16
length of query: 454
length of database: 2,362,478
effective HSP length: 75
effective length of query: 379
effective length of database: 1,987,178
effective search space: 753140462
effective search space used: 753140462
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 55 (26.2 bits)