Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000965-TA|BGIBMGA000965-PA|IPR013017|NHL, IPR000315|Zinc
finger, B-box, IPR001841|Zinc finger, RING-type, IPR003649|B-box,
C-terminal, IPR001258|NHL repeat
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 36 0.031
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 35 0.042
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 33 0.17
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.17
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.17
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 33 0.22
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 31 0.51
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.89
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 30 1.2
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 30 1.6
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 29 2.1
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 3.6
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 4.8
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 28 6.3
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 6.3
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 28 6.3
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 8.3
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 35.5 bits (78), Expect = 0.031
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 33 DCKICDNKLCSPR-VLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
+C +C + +P ++ C H C+ C+ L+ + G S + +CP+C+
Sbjct: 605 NCSVCLDPCLAPVFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMCR 655
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 35.1 bits (77), Expect = 0.042
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPIC 81
CKICD C H FC C+ + +N AGD V CP C
Sbjct: 711 CKICDEVAQDAIESRCHHTFCRLCVTE-YINAAGDGEN----VNCPSC 753
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEACI 58
CKIC K+ +P VLS VFC CI
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCI 281
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 33 DCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLGGGA 92
+C IC N P L C HVFC C+ L K D CP+C+ + M A
Sbjct: 359 ECAICSNVAYKPVRLGCSHVFCLHCLIIL------QKQKVDF---CPLCRAKEVM---KA 406
Query: 93 ASLPSDYVLTNIL 105
S D+ L N +
Sbjct: 407 DSRNIDHALMNFM 419
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 26 DNGKHEQDCKICDNKLCSPRVLSCLHVFCEACI 58
+N E +C+IC L P V C H FC C+
Sbjct: 161 ENVSRELECQICFGMLYDPVVSPCGHTFCGPCL 193
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 93 ASLPSDYVLTNILDVSTMDQSVVCTCCKSKEPAVARCTDCSHFLCSNCNSAHEFMRCFEN 152
A+ PSD+ T I + +D S+ C C A T CSH CS C +++R
Sbjct: 6 ATDPSDWNQTKIPSLKGLDSSLRCLICHEYFRAPL-ITSCSHTFCSFC--IRDYLR---E 59
Query: 153 HRVVPFDALRSSKEKTAVHK 172
H + P A R+ ++++ + K
Sbjct: 60 HPMCP--ACRAPEQESRLRK 77
Score = 31.1 bits (67), Expect = 0.68
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEACI 58
C IC +P + SC H FC CI
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCI 53
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 31.5 bits (68), Expect = 0.51
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 14/63 (22%)
Query: 31 EQDCKIC--DNKLCSP--RVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQE-T 85
+++C IC + SP R L C H+F ACID ++ + DL CP+CKQ T
Sbjct: 495 QRECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNS------DL---CPLCKQSVT 545
Query: 86 KML 88
ML
Sbjct: 546 NML 548
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 30 HEQDCKICDNKLCSPRV-LSCLHVFCEACIDKLMVNEAGDSLKFDLAVECP 79
HE C+IC ++ C P C H FC AC + + + + + ++CP
Sbjct: 127 HEGTCEICYDEGCLPFFSAECDHEFCLACYRQYLDSRISEG---ESVIQCP 174
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 176 CTRHAGESLKFYCCECEVGACTECLTVDHKVGEHRCERIVDAEQNIRAELRNFIVEANTR 235
CT G+ L + ++ E T+ +V C R+ D E +++E R FI N +
Sbjct: 280 CTISQGDDL--WASSAKINLAIESFTLPTRVYGSSCYRMKDIESKLQSEGRGFIHNLNFK 337
Query: 236 AATAGS 241
A S
Sbjct: 338 AKNYSS 343
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 808 DSHGNKFHVAVFSRVGVLVTEFECPYVKFINSLDLRKLDFVQYSKLFY 855
D H + + +L F Y FI +D R+L+F + SK FY
Sbjct: 304 DIHATFIQKLNYDLINLLYEPFHNIYSSFIKPIDDRRLEFDEQSKSFY 351
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 15 SLGDEGSLESNDN----GKHEQDCKICDNKLCSPRVLSCLHVFCEACID 59
S+ DE LE + + + C +C + P C H+FC +CI+
Sbjct: 233 SITDERDLEDKNKLPFIPEGNRKCSLCMEFIHCPAATECGHIFCWSCIN 281
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 18 DEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEAC 57
+EG +++ C IC SP +C H FCE C
Sbjct: 238 EEGMVKNEKKEDIPFVCLICKKDYRSPIATTCGHHFCEQC 277
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 22 LESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACI 58
LE+ K +C IC L P C H +C C+
Sbjct: 73 LETFQKIKKTLECPICTEALQRPFTTHCGHTYCYECL 109
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 108 STMDQSVVCTCCKSKEPAVARCTDCSHFLCSNCNSA--HEFMRC 149
S +S+VC CK DC H LC+ C + H +RC
Sbjct: 81 SDPSESIVCHNCKGNGHI---SKDCPHVLCTTCGAIDDHISVRC 121
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 127 ARCTDCSHFLCSNCNSAHEFMRCFEN 152
+RC HFL CNS H + C +
Sbjct: 353 SRCDTKYHFLGHKCNSCHSYNTCISS 378
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/30 (56%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 332 MLNKTVTSQFARLLEGAPEFDVNYSVEFIS 361
ML KT SQF LEG DVN S EF S
Sbjct: 452 MLKKTCGSQFTHSLEGMFR-DVNISKEFTS 480
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 13/54 (24%)
Query: 34 CKICDNKLCSPRVLSCL---HVFCEACIDKLMVNEAGDSLKFDLAVECPICKQE 84
C IC L SP LSC H+FC CI + A +CP+C+++
Sbjct: 206 CVIC---LDSPENLSCTPCGHIFCNFCILSALGTTAATQ-------KCPVCRRK 249
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,506
Number of Sequences: 5004
Number of extensions: 120190
Number of successful extensions: 302
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 23
length of query: 857
length of database: 2,362,478
effective HSP length: 79
effective length of query: 778
effective length of database: 1,967,162
effective search space: 1530452036
effective search space used: 1530452036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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