GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000965-TA|BGIBMGA000965-PA|IPR013017|NHL, IPR000315|Zinc
finger, B-box, IPR001841|Zinc finger, RING-type, IPR003649|B-box,
C-terminal, IPR001258|NHL repeat
         (857 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    31   0.097
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    31   0.097
DQ383732-1|ABD47743.1|  201|Anopheles gambiae IAP-antagonist mic...    30   0.22 
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   8.4  

>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 17  GDEGSLE-SNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEAC 57
           GD+   E  +D+ +    C +C      P V  C H FCE C
Sbjct: 229 GDDTKYEIHSDDEELPFKCYVCRESFVDPIVTKCKHYFCERC 270


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 17  GDEGSLE-SNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEAC 57
           GD+   E  +D+ +    C +C      P V  C H FCE C
Sbjct: 229 GDDTKYEIHSDDEELPFKCYVCRESFVDPIVTKCKHYFCERC 270


>DQ383732-1|ABD47743.1|  201|Anopheles gambiae IAP-antagonist
           michelob_x protein.
          Length = 201

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 100 VLTNILDVSTMDQSVVCTCCKSKEPAVARCTDCSHFLCSNC-NSAHEFMRCFENHR 154
           VL +IL    +D S      K ++P   R  + +++    C N +H F+RCF  H+
Sbjct: 129 VLHDILFRHLLDTSASAPKKKKRKPKPPRIYNNNYYYNYYCRNISHHFLRCFYRHK 184


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1099

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 213  RIVDAEQNIRAELRNFIVEANTRAATAGSAS-----AKLDDALGDLQRQRDDAESVINEA 267
            RI +A + I A L+    +     A  G+       A L+    +++R R+D  +    A
Sbjct: 995  RICEAAKRITASLQQAWDDERAALAAHGNEQHFEEVADLEARRAEIRRARNDRRNASRRA 1054

Query: 268  FRAYQTALER 277
             RA Q  L+R
Sbjct: 1055 ARARQRELQR 1064


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,483
Number of Sequences: 2123
Number of extensions: 28635
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 6
length of query: 857
length of database: 516,269
effective HSP length: 70
effective length of query: 787
effective length of database: 367,659
effective search space: 289347633
effective search space used: 289347633
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)