GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000965-TA|BGIBMGA000965-PA|IPR013017|NHL, IPR000315|Zinc
finger, B-box, IPR001841|Zinc finger, RING-type, IPR003649|B-box,
C-terminal, IPR001258|NHL repeat
         (857 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    27   0.49 

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 27.5 bits (58), Expect = 0.49
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)

Query: 698 KKIAVRFIDIVAGLAVTAEGLIVAV---DSVTPTVFI 731
           +KIA R IDI  G+    + L VAV   D + P +FI
Sbjct: 90  RKIAARLIDIFMGMRTYEDFLSVAVYCRDRLNPNLFI 126


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,852
Number of Sequences: 429
Number of extensions: 7003
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 1
length of query: 857
length of database: 140,377
effective HSP length: 64
effective length of query: 793
effective length of database: 112,921
effective search space: 89546353
effective search space used: 89546353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)