Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000965-TA|BGIBMGA000965-PA|IPR013017|NHL, IPR000315|Zinc
finger, B-box, IPR001841|Zinc finger, RING-type, IPR003649|B-box,
C-terminal, IPR001258|NHL repeat
(857 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 49 1e-05
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 49 1e-05
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 42 0.002
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 40 0.005
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 40 0.007
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 39 0.012
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 39 0.016
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 38 0.021
At4g01350.1 68417.m00175 DC1 domain-containing protein contains ... 38 0.021
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ... 38 0.028
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 38 0.028
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 38 0.037
At2g21830.1 68415.m02594 DC1 domain-containing protein contains ... 38 0.037
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 38 0.037
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 38 0.037
At4g10240.1 68417.m01680 zinc finger (B-box type) family protein... 37 0.049
At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger) fa... 37 0.049
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 37 0.049
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 37 0.049
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 37 0.065
At5g37220.1 68418.m04470 zinc finger (C3HC4-type RING finger) fa... 36 0.086
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 36 0.11
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 36 0.15
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 35 0.20
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 35 0.20
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 35 0.20
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 35 0.20
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 35 0.20
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa... 35 0.20
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 35 0.26
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 34 0.35
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 34 0.46
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 34 0.46
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 34 0.46
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 34 0.46
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa... 34 0.46
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin... 33 0.61
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ... 33 0.61
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 33 0.81
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 33 0.81
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ... 33 0.81
At1g78600.1 68414.m09160 zinc finger (B-box type) family protein... 33 0.81
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 33 0.81
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 33 0.81
At1g44030.1 68414.m05079 DC1 domain-containing protein contains ... 33 0.81
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 33 1.1
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 33 1.1
At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger) fa... 33 1.1
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 32 1.4
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 32 1.4
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 32 1.4
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 32 1.4
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 32 1.4
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 32 1.4
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 32 1.9
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At2g44410.1 68415.m05523 expressed protein 32 1.9
At2g28840.1 68415.m03506 ankyrin repeat family protein contains ... 32 1.9
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 32 1.9
At1g44020.1 68414.m05078 DC1 domain-containing protein contains ... 32 1.9
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 32 1.9
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa... 31 2.5
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 31 3.2
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 31 3.2
At5g37200.1 68418.m04466 zinc finger (C3HC4-type RING finger) fa... 31 4.3
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 31 4.3
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 30 5.7
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 30 5.7
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 30 5.7
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 30 5.7
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 30 5.7
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 30 5.7
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 30 7.5
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 30 7.5
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 30 7.5
At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI, chlor... 30 7.5
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 30 7.5
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 30 7.5
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa... 30 7.5
At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NA... 29 9.9
At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family pr... 29 9.9
At3g21210.1 68416.m02680 universal stress protein (USP) family p... 29 9.9
At1g19680.1 68414.m02453 expressed protein 29 9.9
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 49.2 bits (112), Expect = 1e-05
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 6 GELYGDGLVSLGDEG------SLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACID 59
GELYG+G + S+ S+D DC IC + + P V C H+FC CI
Sbjct: 14 GELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIH 73
Query: 60 K-LMVNEAGDSLKFDLAVECPICKQE 84
K L V S ++ +CP+CK +
Sbjct: 74 KWLDVQSFSTSDEYQRHRQCPVCKSK 99
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 49.2 bits (112), Expect = 1e-05
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 6 GELYGDGLVSLGDEG------SLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACID 59
GELYG+G + S+ S+D DC IC + + P V C H+FC CI
Sbjct: 14 GELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIH 73
Query: 60 K-LMVNEAGDSLKFDLAVECPICKQE 84
K L V S ++ +CP+CK +
Sbjct: 74 KWLDVQSFSTSDEYQRHRQCPVCKSK 99
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 41.9 bits (94), Expect = 0.002
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query: 20 GSLESNDNGKHEQDCKICDNKLCSPRVL-SCLHVFCEACIDKLMVNEAGDSLKFDLAVEC 78
G S D+G C IC + L +C H FC CI + + + + K +V C
Sbjct: 8 GGSGSIDDGSDFDPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTC 67
Query: 79 PICKQETKML--GGGAASLPSDYVLTNILD--VSTMDQSVVCTCCKSKEPAVARCTDCSH 134
P+CK E + S Y+ NI D V T +Q C ++ +A D +
Sbjct: 68 PLCKTENLSIIHNYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESGFLADVFDVAR 127
Query: 135 F 135
F
Sbjct: 128 F 128
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 40.3 bits (90), Expect = 0.005
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 11 DGLVSLGDEG----SLESNDNGKHEQD--CKICDNKLCSPRVLSCLHVFCEACIDKLMVN 64
DG D+G S E +D+ K + D C IC + + P L+C H++C C
Sbjct: 202 DGCALTFDDGKPLLSCELSDSVKVDIDLTCSICLDTVFDPISLTCGHIYCYMCACSAASV 261
Query: 65 EAGDSLKFDLAVE-CPICKQE 84
D LK A E CP+C+++
Sbjct: 262 NVVDGLKTAEATEKCPLCRED 282
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 39.9 bits (89), Expect = 0.007
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 31 EQDCKIC----DNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQETK 86
E +C +C D + PRVL+C H CE C+ L KF + CP C K
Sbjct: 3 EPECPVCLQSYDGESTVPRVLACGHTACEECLTNL-------PKKFPDTIRCPACTVLVK 55
Query: 87 MLGGGAASLPSDYVLTNI 104
G ++LP + L +
Sbjct: 56 FPPQGPSALPKNIDLLRL 73
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 39.1 bits (87), Expect = 0.012
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 34 CKIC-DNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPIC 81
C IC + LC P++ SC H+FC CI + ++ D+ K D CP+C
Sbjct: 245 CPICLEYPLC-PQITSCGHIFCFPCILQYLLTGV-DNHKVDCFKRCPLC 291
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 38.7 bits (86), Expect = 0.016
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 26 DNGKHEQDCKICDNKLCSPRVLSCLHVFCEACI 58
D K EQ+C +C + V SC HVFC+AC+
Sbjct: 571 DENKSEQECGLCHDPAEDYVVTSCAHVFCKACL 603
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 38.3 bits (85), Expect = 0.021
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 15/67 (22%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK-----QETKML 88
C IC K+ +P +L C H+FCE C+ + F+ CP+C+ + K
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDCVSEW----------FERERTCPLCRALVKPADLKSF 414
Query: 89 GGGAASL 95
G G+ SL
Sbjct: 415 GDGSTSL 421
>At4g01350.1 68417.m00175 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 38.3 bits (85), Expect = 0.021
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 111 DQSVVCTCCKSKEPAVA-RCTDCSHFLCSNCNSAHEFMR--CFENH--RVVPFDALRSSK 165
++ V C CK + C +C + NC + + C H +++PF++L
Sbjct: 133 EEKVSCELCKDSIAGPSYSCLECDVYFHVNCIQLSKEVNHPCHSAHPLKLIPFESLTDDA 192
Query: 166 EKTAVHKPIFCTRHAGESLKFYCCECEVGACTEC 199
E T + C + E++ ++C C +C C
Sbjct: 193 ETTC----LLCGKKPAENMLYHCSVCNFTSCLGC 222
>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 710
Score = 37.9 bits (84), Expect = 0.028
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 78 CPICKQETKMLGGGAASLPS-DYVLTN---ILDVSTMDQSVVCTCCK-SKEPAVARCTDC 132
CP C+ + + G S P+ ++ L + ++ + ++ V C CK S E C +C
Sbjct: 96 CPTCEFKVDLTCGMKPSPPAIEHPLCHDHAVVFLKIREEKVPCELCKESIEGPSYSCLEC 155
Query: 133 SHFLCSNCNSAHEFMR--CFENH--RVVPFDALRSSKEKTAVHKPIFCTRHAGESLKFYC 188
+ NC E + C H +++ ++L EK+ + C E++ ++C
Sbjct: 156 DMYFHVNCVHLSEEVNHPCHSIHPLKLITSESLTDDAEKSC----LLCGNIPAENMLYHC 211
Query: 189 CECEVGACTEC 199
C +C C
Sbjct: 212 SVCNFTSCLGC 222
Score = 30.3 bits (65), Expect = 5.7
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 118 CCKSKEPAVARCTDCSHFLCSNCNSAHEFMRCFENHRVVPFDALRSSKEK-TAVHKPIFC 176
C KS E + RC C LC C + E + + + P KE+ + + C
Sbjct: 501 CQKSIEDYMLRCKACDFDLCLYCATLPE--KIWHRNDGHPLTLCCGEKEEASGKYWCDIC 558
Query: 177 TRHAGESLKFYCC-ECEVGACTECLTVD 203
+ S+ FY C +C V +C+ D
Sbjct: 559 EKELDPSIWFYTCYDCGVTLHAQCVLGD 586
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 37.9 bits (84), Expect = 0.028
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 17 GDEGSLESNDNGKHEQD--CKICDNKLCSPR-VLSCLHVFCEACIDKLMVNEAGDSLKFD 73
GD+ D G+ +D C IC + R V+ CLH FC CIDK M G++
Sbjct: 117 GDQSEFMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSM--RLGNN---- 170
Query: 74 LAVECPICKQ 83
ECP C++
Sbjct: 171 ---ECPACRK 177
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 37.5 bits (83), Expect = 0.037
Identities = 23/52 (44%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
E C IC + S LSC HVFC ACI K S+K D CP+CK
Sbjct: 348 ELKCPICLSLYNSAVSLSCNHVFCNACIVK--------SMKMD--ATCPVCK 389
>At2g21830.1 68415.m02594 DC1 domain-containing protein contains
Pfam profilePF03107: DC1 domain
Length = 569
Score = 37.5 bits (83), Expect = 0.037
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 116 CTCCKSKEPAVA-RCTDCSHFLCSNCNSAHEFMRCF--ENHRVVPFDALRSSKEKTAVHK 172
C C+ K +V C +C ++ C A F+RC E+H F ++KE +
Sbjct: 201 CGACREKIDSVPFGCLECGFYIHMRC--ADSFLRCLMHESHEHKLFYVSSNAKEHFGRNN 258
Query: 173 PI-FCTRHAGESLKFY--CCECEVGACTECLTVDHKVGEHRC 211
C SL Y C ECE+ ECL + + + C
Sbjct: 259 CCQICLGAVVSSLDSYYHCIECELEFHFECLGISKTISKRSC 300
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein
contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT)
domain
Length = 713
Score = 37.5 bits (83), Expect = 0.037
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQE 84
E C +C L P +L C HVFC++C+ K E+G CP+CK +
Sbjct: 22 ELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESG----------CPVCKSK 65
Score = 31.1 bits (67), Expect = 3.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 71 KFDLAVECPICKQETKMLGGGAASLPSDYVLTNILDVSTMDQSVVCTCCKSKEPAVAR 128
K +L ++CP+C K+L LP D+V + + C CKSK P AR
Sbjct: 18 KLELELKCPLC---LKLLNRPVL-LPCDHVFCDSCVHKSSQVESGCPVCKSKHPKKAR 71
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein
contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT)
domain
Length = 714
Score = 37.5 bits (83), Expect = 0.037
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQE 84
E C +C L P +L C HVFC++C+ K E+G CP+CK +
Sbjct: 22 ELKCPLCLKLLNRPVLLPCDHVFCDSCVHKSSQVESG----------CPVCKSK 65
Score = 31.1 bits (67), Expect = 3.2
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 71 KFDLAVECPICKQETKMLGGGAASLPSDYVLTNILDVSTMDQSVVCTCCKSKEPAVAR 128
K +L ++CP+C K+L LP D+V + + C CKSK P AR
Sbjct: 18 KLELELKCPLC---LKLLNRPVL-LPCDHVFCDSCVHKSSQVESGCPVCKSKHPKKAR 71
>At4g10240.1 68417.m01680 zinc finger (B-box type) family protein
zinc-finger protein R2931, Oryza sativa, PIR3:JE0116
Length = 162
Score = 37.1 bits (82), Expect = 0.049
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 8/100 (8%)
Query: 114 VVCTCCKSKEPAVARCTDCSHFLCSNCN-SAHEFMRCFENHRVVPFDALRSSKEKTAVHK 172
+ C C+ E V C+D LC C+ HE + F+ H V +S TA
Sbjct: 3 IQCEVCEKAEAEVLCCSD-EAVLCKPCDIKVHEANKLFQRHHRVALQKDAASAT-TASGA 60
Query: 173 PI--FCTRHAGESLKFYCCECEVGACTECLTVDHKVGEHR 210
P+ C G F+C E C +C H H+
Sbjct: 61 PLCDICQERKGY---FFCLEDRAMLCNDCDEAIHTCNSHQ 97
>At3g53690.1 68416.m05929 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 320
Score = 37.1 bits (82), Expect = 0.049
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 33 DCKIC-DNK--LCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPI 80
DC+IC D+K + S R+ C H +C C+ K + + D++ L++ECP+
Sbjct: 114 DCEICVDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNI---LSIECPV 161
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 37.1 bits (82), Expect = 0.049
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 24 SNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPIC 81
S K + C C L P VL+C HV+CE C+ V+ A +S K EC +C
Sbjct: 182 SKQISKDDLLCSACKELLVRPVVLNCGHVYCEGCV----VDMAEESEKIK-CQECNVC 234
Score = 31.1 bits (67), Expect = 3.2
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
C +C L P VLSC H+ C C+ K M N +S CPIC+
Sbjct: 26 CCVCLELLYKPIVLSCGHLSCFWCVHKSM-NGFRES-------HCPICR 66
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 37.1 bits (82), Expect = 0.049
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 27 NGKHEQD-CKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQET 85
N E D C IC + +P +C H FC CI ++V G +L+ +CP+C++
Sbjct: 2 NSPPENDLCSICHSHFTAPCQANCSHWFCGNCI--MLVWRHGSTLQ---PCKCPLCRRHI 56
Query: 86 KML 88
+L
Sbjct: 57 SLL 59
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 36.7 bits (81), Expect = 0.065
Identities = 45/158 (28%), Positives = 61/158 (38%), Gaps = 18/158 (11%)
Query: 53 FCEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLGGGAASLP-SDYVLTNILDVSTMD 111
FC+AC+ L +NE + VEC ET P + LT L V D
Sbjct: 367 FCQACV--LPINEGN----VYVCVECDFILHETCAYAPRKKVHPLHPHPLT--LKVDHGD 418
Query: 112 QSVVCTCCKSKEPAVAR-CTD--CSHFLCSNCNSAHEFMRCFENHRVVPFDALRSSKEKT 168
C+ C K CT C + L + C S E ++ HR F +L KEK
Sbjct: 419 ALFQCSACMRKSNGFGYDCTSRTCYYILDAVCASTAEPFN-YQGHRHPLFLSL-DPKEKP 476
Query: 169 AVHKPIFCTRHAGESLKFYCCECEVGACTECLTVDHKV 206
H C + + C EC+ C EC T+ + V
Sbjct: 477 MCH---ICKSTKNKKV-LNCIECDFIICFECATLPYMV 510
>At5g37220.1 68418.m04470 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 36.3 bits (80), Expect = 0.086
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 11 DGLVSLGDEGSLESNDNGKHEQDCKICDNKL----CSPRVLSCLHVFCEACIDKLMVNEA 66
D L L +E +ES D + ++ C IC L S ++SCLH+F ++CI + +
Sbjct: 137 DVLQRLVEEQKVESIDLEEEKKTCSICMENLNSESSSENIISCLHLFHQSCIFESESSVR 196
Query: 67 GDSLK 71
G+ +K
Sbjct: 197 GNIMK 201
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 35.9 bits (79), Expect = 0.11
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 18 DEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDL--- 74
DE D+G + DC IC +++ P V C H+FC CI K + D
Sbjct: 6 DEDDTTLVDSGG-DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDH 64
Query: 75 ---AVECPICKQE 84
+CP+CK +
Sbjct: 65 KREPPKCPVCKSD 77
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 35.5 bits (78), Expect = 0.15
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 23 ESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
++N++G DC IC + P V C H+FC CI K + + CP+CK
Sbjct: 35 QANESGCF--DCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCK 92
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.20
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 5 NGE-LYGDGLVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMV 63
NG+ GDG++ + S +G DC IC + P + C H++C C+ +
Sbjct: 110 NGDGALGDGVLDKKADVEKSSGSDGNFF-DCNICLDLSKEPVLTCCGHLYCWPCLYQW-- 166
Query: 64 NEAGDSLKFDLAVECPICKQE 84
L+ A ECP+CK E
Sbjct: 167 ------LQISDAKECPVCKGE 181
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.20
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 5 NGE-LYGDGLVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMV 63
NG+ GDG++ + S +G DC IC + P + C H++C C+ +
Sbjct: 110 NGDGALGDGVLDKKADVEKSSGSDGNFF-DCNICLDLSKEPVLTCCGHLYCWPCLYQW-- 166
Query: 64 NEAGDSLKFDLAVECPICKQE 84
L+ A ECP+CK E
Sbjct: 167 ------LQISDAKECPVCKGE 181
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.20
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 5 NGE-LYGDGLVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMV 63
NG+ GDG++ + S +G DC IC + P + C H++C C+ +
Sbjct: 110 NGDGALGDGVLDKKADVEKSSGSDGNFF-DCNICLDLSKEPVLTCCGHLYCWPCLYQW-- 166
Query: 64 NEAGDSLKFDLAVECPICKQE 84
L+ A ECP+CK E
Sbjct: 167 ------LQISDAKECPVCKGE 181
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 35.1 bits (77), Expect = 0.20
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 33 DCKICDNKLCSPRVLSCLHVFCEACIDK-LMVNEAGDSLKFDLAVECPICKQETKM 87
DC IC + P V +C H++C +C+ + L V+E A ECP+CK E +
Sbjct: 140 DCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSE---------AKECPVCKGEVSV 186
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 35.1 bits (77), Expect = 0.20
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 112 QSVVCTCCKSKEPAVARCTDCSHFLCSNCN 141
++V+C CK+ +P V RC D FLC CN
Sbjct: 53 RTVLCDSCKN-QPCVVRCFDHKMFLCHGCN 81
>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 35.1 bits (77), Expect = 0.20
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLGGGAA 93
C IC +P +C H FC CI ++V G +L+ +CP+C++ +L
Sbjct: 10 CSICHGHFNAPCQSNCSHWFCGNCI--MLVWRHGSTLR---PCKCPLCRRPISLLVPSEE 64
Query: 94 SLPS--DYVLTNIL-DVSTMDQ 112
++ S D ++ +L DV T ++
Sbjct: 65 TVRSRNDATVSEVLHDVETYNR 86
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 34.7 bits (76), Expect = 0.26
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 34 CKICDNKLCSPRVLS-CLHVFCEACIDKLMVNEAGDSLKFDLAVECPIC 81
C IC N +S CLH FC +CI +NE ++ CP+C
Sbjct: 16 CPICTNPFKDATTISECLHTFCRSCIRNKFINERVNA--------CPVC 56
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 34.3 bits (75), Expect = 0.35
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 34 CKICDNKLCSPR-VLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQ 83
C IC + R V+ CLH FC CIDK M G++ ECP C++
Sbjct: 103 CSICLGIIRKTRTVMECLHRFCRECIDKSM--RLGNN-------ECPTCRK 144
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 33.9 bits (74), Expect = 0.46
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 23 ESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
++ND G + +C IC P V C H+FC C+ + + + + ECP+CK
Sbjct: 18 DTNDQGG-DFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQ-------ECPVCK 69
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 33.9 bits (74), Expect = 0.46
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 23 ESNDNGKHEQDCKICDNKLCSPR-VLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPIC 81
E+ + + C IC + S R +L C H FC +CI K + K CP+C
Sbjct: 289 EATEKAPAQVSCIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKK----TTCPLC 344
Query: 82 K 82
K
Sbjct: 345 K 345
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 33.9 bits (74), Expect = 0.46
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACIDK-----LMVNEAGD---SLKFDLAV-ECPIC 81
E C+IC + +P C H FC+AC++ +V E G L+ +V +CP C
Sbjct: 525 EFKCQICQKVMTNPVTTPCAHNFCKACLESKFAGTALVRERGSGGRKLRSQKSVMKCPCC 584
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 33.9 bits (74), Expect = 0.46
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 23 ESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
++N+N +C IC + P V C H+FC C+ K + + +CP+CK
Sbjct: 12 DTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSK-------DCPVCK 64
>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
family protein
Length = 421
Score = 33.9 bits (74), Expect = 0.46
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 34 CKICDNKLCSPRVLS-CLHVFCEACI-DKLMVNE 65
C ICDN L +S CLH FC CI +K+ +E
Sbjct: 16 CSICDNILRDATTISECLHTFCRKCIYEKITEDE 49
>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
repeat family protein contains similarity to
ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
contains Pfam domains PF00023: Ankyrin repeat and
PF00069: Protein kinase domain
Length = 834
Score = 33.5 bits (73), Expect = 0.61
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 34 CKICDNKLCS----PRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLG 89
C +C + P +L C H FC+ C+ K+ S D + CP C+ ++G
Sbjct: 10 CSVCHTRYNEDERVPLLLQCGHGFCKDCLSKMF------STSSDTTLTCPRCR-HVSVVG 62
Query: 90 GGAASLPSDYVLTNILDVSTMDQSVVC 116
L +Y + ++ ++ + C
Sbjct: 63 NSVQGLRKNYAMLALIHAASGGANFDC 89
>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 889
Score = 33.5 bits (73), Expect = 0.61
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 14/158 (8%)
Query: 54 CEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLGGGAASLPSDYVLTNILDVSTMDQS 113
C+ACI + ++ D ++ +E L ++LT + MD +
Sbjct: 671 CQACITPIYFGNVYSCMQCDFSLH-----EECAKLSRKTHHPVHPHLLTLVGKSDIMDAT 725
Query: 114 VVCTCCKSKEPA----VARCTDCSHFLCSNCNSAHEFMRCFENHRVVPFDALRSSKEKTA 169
C+ C K R +C + C + +E + E+H F + +E+
Sbjct: 726 KSCSVCPWKCTTGFFYECRERECRFKVHVQCATIYEPL-VHESHMDPLFLTSKPGEERRC 784
Query: 170 -VHKPIFCTRHAGESLKFYCCECEVGACTECLTVDHKV 206
V K + H + F C EC+ C +C T+ HKV
Sbjct: 785 CVCKEL---GHCSTNETFNCIECDFALCFKCATLPHKV 819
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 33.1 bits (72), Expect = 0.81
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 17 GDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHV-FCEACIDKLMVNEAGDSLKFDLA 75
G E +++ +D GK +C +C ++ VL C H+ C C +L+F
Sbjct: 271 GIENTVDGSDEGK---ECVVCLSEPRDTTVLPCRHMCMCSGC---------AKALRFQTN 318
Query: 76 VECPICKQETKML 88
+ CP+C+Q +ML
Sbjct: 319 L-CPVCRQPVEML 330
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 33.1 bits (72), Expect = 0.81
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 82 KQETKMLGGGAASLPSDYVLTNILDVSTMDQSVVCTCCKSK--EPAVARCTDCSHFLCSN 139
K E K+ A L +D+VLT D + + C+ C++ +P V T+C+H+ C
Sbjct: 54 KLEKKIKKETARKLETDFVLTGEEDDDALP--LACSICQNPFLDPVV---TNCNHYFCDK 108
Query: 140 CNSAH 144
C H
Sbjct: 109 CALKH 113
Score = 33.1 bits (72), Expect = 0.81
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEAC 57
C IC N P V +C H FC+ C
Sbjct: 86 CSICQNPFLDPVVTNCNHYFCDKC 109
>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 538
Score = 33.1 bits (72), Expect = 0.81
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 105 LDVSTMDQSVVCTCCKSKEPAVARCTDCSHFLCSNCNSAHEFM--RCFENHRVVPFDALR 162
L ++T+D+ C C + V RC DC + L C + + RC + H +V LR
Sbjct: 377 LFLTTIDRGT-CLACGENKLNVLRCVDCDYSLDYKCATLPLVIKHRC-DTHYLV----LR 430
Query: 163 SSKE-KTAVHKPIFCTRHAGESLKFYCC-ECEVGACTECLTVD 203
S +E + C FY C +C V EC+T D
Sbjct: 431 SGEEAPEGKYWCEICEAETNPERWFYTCDDCGVVCHIECVTGD 473
>At1g78600.1 68414.m09160 zinc finger (B-box type) family protein
similar to zinc finger protein GI:3618316 from [Oryza
sativa]
Length = 299
Score = 33.1 bits (72), Expect = 0.81
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 114 VVCTCCKSKEPAVARCTDCSHFLCSNCN-SAHEFMRCFENHRVVPFDALRSSKEKTAVHK 172
+ C C++ E V C D LC C+ H + H+ VP A SS K +
Sbjct: 3 IQCNVCEAAEATVLCCAD-EAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDI-- 59
Query: 173 PIFCTRHAGESLKFYCCECEVGACTECLTVDHKVGEH 209
C +G F+C + C +C H V H
Sbjct: 60 ---CQEASG---FFFCLQDRALLCRKCDVAIHTVNPH 90
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 33.1 bits (72), Expect = 0.81
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACID-----KLMVNE---AGDSLKFDLAV-ECPIC 81
E C+IC L P C H FC+AC++ K +V E G +L+ V CP C
Sbjct: 512 EFKCQICQQVLTLPVTTPCAHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNVLNCPCC 571
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 33.1 bits (72), Expect = 0.81
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACID-----KLMVNE---AGDSLKFDLAV-ECPIC 81
E C+IC L P C H FC+AC++ K +V E G +L+ V CP C
Sbjct: 515 EFKCQICQQVLTLPVTTPCAHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNVLNCPCC 574
>At1g44030.1 68414.m05079 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 597
Score = 33.1 bits (72), Expect = 0.81
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 131 DCSHFLCSNCNSAHEFMRCFE-----NHRVVPFDALRSSKEKTAV--HKPIFCTRHAGES 183
D SHFLC +CN + + C + H + P +L+ +K+++ + FC +
Sbjct: 325 DASHFLCKDCN-GEDHVECEKTPVEVKHLLHPKHSLQLVLQKSSITQTRKCFCCDEDLKL 383
Query: 184 LKFYCCECEVG---ACTE---CLTVDH 204
+ +YC C+ AC E L +DH
Sbjct: 384 IFYYCTVCDYAMNIACAEKPPVLFIDH 410
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 32.7 bits (71), Expect = 1.1
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 113 SVVCTCCKSKEPAVARCTDCSHFLCSNCNSAHEFMRC-FENHRV-VPFDALRSSKEKTAV 170
S VC CK + V C DC + L C + +R ++ H + + +D K+
Sbjct: 433 SKVCETCKEESDYVLTCMDCDYVLDFECATLPPTVRYKYDRHPLKLCYD---GDKDMAGS 489
Query: 171 HKPIFCTRHAGESLKFYCCE 190
+ C + +++ FY CE
Sbjct: 490 YWCEICEKEMDQNIIFYTCE 509
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 32.7 bits (71), Expect = 1.1
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 29 KHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLK-FDLAVECPICKQ 83
+++ C IC + +P L C H+FC +C +K +CPIC++
Sbjct: 226 EYDLTCAICLETVFNPYALKCGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICRE 281
>At2g30580.1 68415.m03726 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 420
Score = 32.7 bits (71), Expect = 1.1
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 34 CKICDNKLCSPRVLS-CLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLGGGA 92
C +CD L +S CLH FC CI + + + +S CP+C + + G
Sbjct: 20 CPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIES--------CPVC--DIDLGGTPL 69
Query: 93 ASLPSDYVLTNI 104
L D++L ++
Sbjct: 70 EKLRPDHILQDL 81
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 32.3 bits (70), Expect = 1.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACID 59
E C+IC L P C H FC+AC++
Sbjct: 492 EFSCQICREVLSLPVTTPCAHNFCKACLE 520
Score = 30.7 bits (66), Expect = 4.3
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 13 LVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNE 65
L+S G + ++ + K E C IC P C H FC C +K V +
Sbjct: 108 LMSGGGDDGVDEEEKKKLEIFCSICIQLPERPITTPCGHNFCLKCFEKWAVGQ 160
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 32.3 bits (70), Expect = 1.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 23 ESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNE 65
+S+ G+ E C +C K+ C H FC+ C +LM +
Sbjct: 301 DSHGGGEGELSCCVCMVKIKGASFTPCGHTFCKLCSKELMAQK 343
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 14 VSLGDEGSLESNDNGKHEQDCKICDNKLCSPR-VLSCLHVFCEACIDKLMVNEAGDSLKF 72
V D ES + K ++ C IC L + + V C H C C + ++
Sbjct: 1308 VDASDPAEQESENLLKRDEACPICHEILRNQKMVFQCGHSTCCNCFFAMTERKSVQET-L 1366
Query: 73 DLAVECPICKQET 85
V CPIC+Q T
Sbjct: 1367 QKWVMCPICRQHT 1379
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 32.3 bits (70), Expect = 1.4
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 115 VCTCCKSKEPAVARCTDCSHFLCSNCNSAHEFMRCFENHRVVPFDALRSSKEKTAVHKPI 174
+C C EP C C+ LC C+ + M H P + ++ H
Sbjct: 23 ICNICFKDEPVEFACDPCNFDLCKACSDLPQKM-SHHLHPEHPLEFRIGEDDQKTKHMVC 81
Query: 175 FCTRHAGESLKFY--CCECEV 193
+ K+Y C +CE+
Sbjct: 82 VVCGNMSSGAKYYYECSKCEI 102
Score = 30.7 bits (66), Expect = 4.3
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 4/104 (3%)
Query: 107 VSTMDQSVVCTCCKSKEPAVA-RCTDCSHFLCSNCNSA--HEFMRCFENHRVVPFDALRS 163
+ T D C C + V C C +L C A + HR+ ++ R
Sbjct: 195 IQTFDGEKSCNACHGQFVGVPFGCLGCGFYLHLRCADALLRGLLYKSHEHRLFYVESTRR 254
Query: 164 SKEKTAVHKPIFCTRHAGESLKFYCC-ECEVGACTECLTVDHKV 206
++ + C +Y C EC++ T+CL + V
Sbjct: 255 VADERVKQPCLICKETVVYDRFYYLCVECDLKCHTKCLEIPEYV 298
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 32.3 bits (70), Expect = 1.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACID 59
E C+IC L P C H FC+AC++
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACLE 523
Score = 30.7 bits (66), Expect = 4.3
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 13 LVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNE 65
L+S G + ++ + K E C IC P C H FC C +K V +
Sbjct: 108 LMSGGGDDGVDDEEKKKLEIFCSICIQLPERPVTTPCGHNFCLKCFEKWAVGQ 160
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 32.3 bits (70), Expect = 1.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 31 EQDCKICDNKLCSPRVLSCLHVFCEACID 59
E C+IC L P C H FC+AC++
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACLE 523
Score = 30.7 bits (66), Expect = 4.3
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 13 LVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNE 65
L+S G + ++ + K E C IC P C H FC C +K V +
Sbjct: 108 LMSGGGDDGVDDEEKKKLEIFCSICIQLPERPVTTPCGHNFCLKCFEKWAVGQ 160
>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 508
Score = 31.9 bits (69), Expect = 1.9
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 13 LVSLGDEGSLESNDNGKHEQD-CKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLK 71
+V++ E ND +D C +C + C+ C H FC C L S
Sbjct: 299 IVNIAQECGWRENDCLTPCRDPCAVCLERKCTVAADGCAHEFCTNCALYLSTTSITSSKT 358
Query: 72 FDL---AVECPICK 82
++ +V CP+C+
Sbjct: 359 SNVTPGSVPCPLCR 372
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 19 EGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEAC 57
E S++ + K + C+IC K ++ C HV C C
Sbjct: 4645 EASMKEAETAKSQWLCQICQTKEVEVTIVPCGHVLCRHC 4683
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 31.9 bits (69), Expect = 1.9
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 7 ELYGDGLVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHV-FCEACIDKLMVNE 65
E+YG G + D+ ++N+ GK +C IC ++ VL C H+ C C KL
Sbjct: 221 EIYGIG--NTVDDNGEDANERGK---ECVICLSEPRDTTVLPCRHMCMCSGCA-KL---- 270
Query: 66 AGDSLKFDLAVECPICKQETKML 88
L+F + CPIC+Q L
Sbjct: 271 ----LRFQTNL-CPICRQPVDRL 288
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 31.9 bits (69), Expect = 1.9
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 15 SLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDL 74
SL D L D + E C IC P +C H FC+ C+ A D
Sbjct: 705 SLSDHVVLPCIDKLRDELSCAICLEICFEPSTTTCGHSFCKKCL-----RSAADK----C 755
Query: 75 AVECPICKQETKMLGGG 91
+CP C+Q ++G G
Sbjct: 756 GRKCPKCRQ---LIGNG 769
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 108 STMDQSVVCTCCKSKEPAVARCTDCSHFLCSNC 140
S +++ V C CK K + C +C + +C C
Sbjct: 483 SELEKKVRCQICKGKSYSKLNCMECDYIICFRC 515
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 31.9 bits (69), Expect = 1.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEACIDKL 61
CK C+++ + C H+FC C+ KL
Sbjct: 826 CKACNDRPKEVVITKCYHLFCNPCVQKL 853
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 31.9 bits (69), Expect = 1.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 33 DCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQE 84
DC IC K P + C H+FC C +L L + ECP+C E
Sbjct: 124 DCNICLEKAEDPILTCCGHLFCWGCFYQL-------PLIYLNIKECPVCDGE 168
>At2g28840.1 68415.m03506 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 456
Score = 31.9 bits (69), Expect = 1.9
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 82 KQETKMLGGGAASLPSDYVLTNILDVSTMDQSVVCTCCKSKEPAVARCTDCSHFLCSNCN 141
++E +L G A SLPS ++S + + +C C ++ DC H +C+ C
Sbjct: 285 EREKTILKGTAYSLPSPSFSDTDDNMSEVSDTELCCIC-FEQVCTIEVKDCGHQMCAQCT 343
Query: 142 SA 143
A
Sbjct: 344 LA 345
Score = 29.5 bits (63), Expect = 9.9
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 15 SLGDEGSLESNDNGKHEQD---CKICDNKLCSPRVLSCLHVFCEACIDKLMV-NEAGDSL 70
SL +++DN D C IC ++C+ V C H C C L N+ +
Sbjct: 297 SLPSPSFSDTDDNMSEVSDTELCCICFEQVCTIEVKDCGHQMCAQCTLALCCHNKPNPTT 356
Query: 71 KFDLAVECPICK 82
CP C+
Sbjct: 357 STVTPPVCPFCR 368
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 31.9 bits (69), Expect = 1.9
Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 6 GELYGDGLVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNE 65
G Y + GDE S ND H C++C +K+C+ H F L +
Sbjct: 88 GNDYHSSCDTCGDEVS--ENDRSYHCPTCEMCYHKVCNLYPHEIRHPF--HAQHPLKLTF 143
Query: 66 AGDSLKFDLAVECPICKQETKMLGGGAASLPSDYVL--TNILDVSTMDQSV---VCTCCK 120
+ DS DL E P QE S SD V ++I D + D S+ C CC+
Sbjct: 144 SSDSSFTDLK-ELPASWQEEPSDSETEDSDASDDVSSDSSISDDVSSDSSISDLKCKCCQ 202
Query: 121 SK-EPAVARCTDCSHFLCSNC 140
+ + C+ C L C
Sbjct: 203 TNLQEVYYHCSICKFNLNLTC 223
>At1g44020.1 68414.m05078 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 577
Score = 31.9 bits (69), Expect = 1.9
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 126 VARCTDCSHFLCSNCNSAHEFMRCFE-----NHRVVPFDALRSSKEKTAV--HKPIFCTR 178
+A+ + SHF+C +CN + + C + H + P +L+ +K+++ + FC
Sbjct: 300 LAKGEEASHFICKDCN-GEDHIECEKTPVEVKHLLHPKHSLQLVSQKSSIIQTRKCFCCD 358
Query: 179 HAGESLKFYCCECEVG---ACTE 198
+ + +YC C+ AC E
Sbjct: 359 EDLKKIFYYCTGCDYDMNIACAE 381
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 33 DCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
DC +C L P C H FC +C+ + M D +CP+C+
Sbjct: 195 DCTVCLKLLYEPATTPCGHTFCRSCLFQSM----------DRGNKCPLCR 234
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 33 DCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
DC +C L P C H FC +C+ + M D +CP+C+
Sbjct: 195 DCTVCLKLLYEPATTPCGHTFCRSCLFQSM----------DRGNKCPLCR 234
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 33 DCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
DC +C L P C H FC +C+ + M D +CP+C+
Sbjct: 195 DCTVCLKLLYEPATTPCGHTFCRSCLFQSM----------DRGNKCPLCR 234
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 31.9 bits (69), Expect = 1.9
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 33 DCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICK 82
DC +C L P C H FC +C+ + M D +CP+C+
Sbjct: 195 DCTVCLKLLYEPATTPCGHTFCRSCLFQSM----------DRGNKCPLCR 234
>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 341
Score = 31.5 bits (68), Expect = 2.5
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 7 ELYGDGLVSLGDEGSLE-SNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEA 56
E+YG G GD+ S + +ND GK +C IC ++ VL C H+ E+
Sbjct: 294 EIYGIGNTVEGDDDSADDANDPGK---ECVICLSEPRDTTVLPCRHMVSES 341
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 31.1 bits (67), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 33 DCKICDNKLCSPRVLSCLHVFCEACI 58
DC IC + + + C H+FC ACI
Sbjct: 615 DCPICISPPTNIIITRCAHIFCRACI 640
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 31.1 bits (67), Expect = 3.2
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 1 MEEMNGELYGDGLVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDK 60
+EE+ E +V L +E N K+ C +C ++ ++ C H+FC+ CI +
Sbjct: 303 LEELGSESVEAAIVRLQEEVK-----NCKNILKCGVCFDRPKEVVIVKCYHLFCQQCIQR 357
>At5g37200.1 68418.m04466 zinc finger (C3HC4-type RING finger)
family protein low similarity to ring-H2 finger protein
RHY1a from Arabidopsis thaliana [gi:3790593], ring
finger-H2 protein from Xenopus laevis [gi:13752371];
contains Pfam domain zinc finger, C3HC4 type (RING
finger) PF00097
Length = 217
Score = 30.7 bits (66), Expect = 4.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 10 GDGLVSLGDEGSLESNDNGKHEQDCKICDNKLCSP-----RVLSCLHVFCEACI 58
G+ L +E +ES D + ++ C IC K RV CLH+F + C+
Sbjct: 135 GEVFHRLVEEQRVESADLEEEDETCSICIEKFSESHEDIIRVPDCLHLFHQGCL 188
>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 688
Score = 30.7 bits (66), Expect = 4.3
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 49 CLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLGGGAASLPSDYVLTNILDVS 108
C FC C +K V A + +L ++ +Q++ LG + ++ I+ V
Sbjct: 486 CYFSFCTLCKEKRHVGVA--CMSPELRLQILQERQDSSRLGEEQRRKEKE-MINEIMSVK 542
Query: 109 TMDQSVV-CTCCKSKEPAVARCTDCSHFLCSNCNSAHEFMRCFE 151
+ +S C CK A++R C+ +C+NC + RC E
Sbjct: 543 VIMKSAKQCPSCKI---AISRTGGCNKMVCNNCGQ-YFCYRCNE 582
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 30.3 bits (65), Expect = 5.7
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 112 QSVVCTCCKSKEPAVARCTDCSHFLCSNCN-SAHE 145
+++VC C + +PA RC+D LC NC+ S H+
Sbjct: 44 RTLVCERCNA-QPASVRCSDERVSLCQNCDWSGHD 77
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 30.3 bits (65), Expect = 5.7
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 13 LVSLGDEGSLESNDNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKF 72
++++ E L+S G C +C + C+ C H C C L + S+
Sbjct: 291 ILNIAREFGLQSATIGDEVDICAVCLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVTV 350
Query: 73 DL--AVECPICK 82
++ CP+C+
Sbjct: 351 GPPGSIPCPLCR 362
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 30.3 bits (65), Expect = 5.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 10 GDGLVSLGDEGSLESNDNGKHEQ--DCKICDNKLCSPRVLSCLHVFCEACI 58
G+ + S ++G+ ++D+ E C +C + P C HVFC +CI
Sbjct: 301 GNLITSEAEKGNWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCI 351
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 30.3 bits (65), Expect = 5.7
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 176 CTRHAGESLKFYCCECEVGACTECLTVDHKVGEHR 210
C+ G+ K C +CE G C +C + KV HR
Sbjct: 531 CSECDGDG-KLSCDDCEFGLCFKCAILPQKVMRHR 564
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 30.3 bits (65), Expect = 5.7
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 26 DNGKHEQDCKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQET 85
D+ + C IC P V C H+FC C+ K + + + CP+CK
Sbjct: 11 DDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSN-------HCPVCKALV 63
Query: 86 K 86
K
Sbjct: 64 K 64
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 30.3 bits (65), Expect = 5.7
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 12 GLVSLGDEGSLESN-DNGKHEQDCKICDNKLCSPRVLSCLHVFCEAC 57
G+ DE +S+ D C IC P V C H FCE C
Sbjct: 254 GVEDEDDEADKDSDEDENALPFACFICREPFVDPVVTKCKHYFCEHC 300
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 18 DEGSLESN-DNGKHEQDCKICDNKLCSPRVLSCLHVFCEAC 57
DE +S+ D C IC P V C H FCE C
Sbjct: 295 DEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHC 335
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 18 DEGSLESN-DNGKHEQDCKICDNKLCSPRVLSCLHVFCEAC 57
DE +S+ D C IC P V C H FCE C
Sbjct: 295 DEADKDSDEDENALPFACFICREPFLDPVVTKCKHYFCEHC 335
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 29.9 bits (64), Expect = 7.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 20 GSLESN-DNGKHEQDCKICDNKLCSPRVLS--CLHVFCEACIDKLMVNEAGDSLKFDLAV 76
G + SN D K ++C IC S +LS C H FC C+ + + S ++ +
Sbjct: 192 GIVSSNLDGDKPIENCSICCEDRQSEMMLSLKCTHKFCSHCMKTYVEGKVKTS---EVPI 248
Query: 77 ECP 79
CP
Sbjct: 249 RCP 251
>At4g18480.1 68417.m02741 magnesium-chelatase subunit chlI,
chloroplast / Mg-protoporphyrin IX chelatase (CHLI) (CS)
(CH42) identical to SP|P161127 Magnesium-chelatase
subunit chlI, chloroplast precursor (Mg-protoporphyrin
IX chelatase) (Protein CS/CH-42) {Arabidopsis thaliana}
Length = 424
Score = 29.9 bits (64), Expect = 7.5
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 4/126 (3%)
Query: 259 DAESVINEAFRAYQTALERRRDKAXXXXXXXXXXXXXXVMDLFDRVDK---TVQRIDCAC 315
D E + E +A++ L + ++ V L D TV+R +
Sbjct: 197 DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDVLLDSAASGWNTVEREGISI 256
Query: 316 KFTARLLHCGDGT-EIVMLNKTVTSQFARLLEGAPEFDVNYSVEFISKMDSFDANVNDTF 374
AR + G G E L + +F + D + V+ + + FD+N D
Sbjct: 257 SHPARFILIGSGNPEEGELRPQLLDRFGMHAQVGTVRDADLRVKIVEERARFDSNPKDFR 316
Query: 375 GTFRTE 380
T++TE
Sbjct: 317 DTYKTE 322
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 29.9 bits (64), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 34 CKICDNKLCSPRVLSCLHVFCEACIDKLMVNEAGDS 69
C +C + P V C HVFC C+ VN GD+
Sbjct: 395 CSVCSDPPKDPVVTLCGHVFCYECVS---VNINGDN 427
>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
hypothetical protein GI:3184279 from [Arabidopsis
thaliana]; contains Pfam profile PF03107: DC1 domain
Length = 814
Score = 29.9 bits (64), Expect = 7.5
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 53 FCEACIDKLMVNEAGDSLKFDLAVECPICKQETKMLGGGAASLPSDYVLTNILDVSTMDQ 112
FC+AC+ + ++ D + IC ++ + + A P L + T D
Sbjct: 554 FCQACVIPIYEGNHYICVECDFTIH-EICAKDRRRIQH--ALHPHPLTLNAVSKYDTGDF 610
Query: 113 SVVCTCC-KSKEPAVARCT--DCSHFLCSNCNSAHEFMRCFENHRVVPFDALRSSKEKTA 169
C C ++ V C+ +C+ L C S E F+ H F A+ S+
Sbjct: 611 E--CNACVRNSGGFVYMCSRKECNFDLDVRCASISEPFN-FQGHEHSLFLAIDPSE---- 663
Query: 170 VHKPIFCTRHAGES-LKFYCCECEVGACTECLTVDHK 205
KPI C ES + C +C+ C +C T+ K
Sbjct: 664 --KPI-CQMCKSESHIPLNCIKCDFVVCIKCATLPFK 697
>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1055
Score = 29.9 bits (64), Expect = 7.5
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 616 PHGFCLGNDEDIIVADTNNHRITVFDK--------SGTHKFNFGNAGKEEGQLWYPRKVA 667
P G ND I + D+ NH+I D +GT K F + + QL P +A
Sbjct: 805 PLGVLCANDGQIYLTDSYNHKIKKLDPVTKRVVTLAGTGKAGFKDGKVKGAQLSEPAGLA 864
Query: 668 VVRATGKFVVCDRGNERSR 686
+ G+ V D N R
Sbjct: 865 ITE-NGRLFVADTNNSLIR 882
>At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NADP+) [Nicotiana tabacum]
GI:3021512; contains Pfam domain PF00180: dehydrogenase,
isocitrate/isopropylmalate family
Length = 485
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 55 EACIDKLMVNEAGDSLKFDLAVEC-PICKQETKMLGGGAASL--PSDYVLTNILDVSTMD 111
+A DK+ V A +LK+++A++C I E ++ G S+ + + NILD +
Sbjct: 122 DATDDKVTVESAEAALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVFR 181
Query: 112 QSVVCT 117
+ ++C+
Sbjct: 182 EPIMCS 187
>At5g13060.1 68418.m01497 armadillo/beta-catenin repeat family
protein / BTB/POZ domain-containing protein contains
armadillo/beta-catenin-like repeats, Pfam:PF00514 and a
BTB/POZ domain, Pfam:PF00651
Length = 709
Score = 29.5 bits (63), Expect = 9.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 695 HFLKKIAVRFIDIVAGLAVTAEGLIVAVDSVTPTVFILSEEGELMSWFDCSECM 748
H L+K + ++A + + LIV ++ PTV +L GE C ECM
Sbjct: 119 HKLEKDCALALGLIAAIQPGYQQLIVDAGAIVPTVKLLKRRGE------CGECM 166
>At3g21210.1 68416.m02680 universal stress protein (USP) family
protein / DC1 domain-containing protein contains Pfam
profiles PF03107: DC1 domain, PF00582: universal stress
protein family
Length = 686
Score = 29.5 bits (63), Expect = 9.9
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 116 CTCCKSKEPAVAR--CT-DCSHFLCSNCNSAHEFMRCFENHRVVPFDALRSSKEKTAVHK 172
CT CK + A C DC+ L +C S E + HR P + E TA
Sbjct: 498 CTACKRESNGFAYTCCARDCNFTLDVSCASIAESLI----HRFHPHP-IYLIHESTAQEF 552
Query: 173 PIFCTRHAGESLKFYCCECEVGACTECLTVDHKV 206
C + G L C EC C C T+ +K+
Sbjct: 553 CSICGQLIGHRLN--CGECRFALCFGCATLPNKL 584
>At1g19680.1 68414.m02453 expressed protein
Length = 444
Score = 29.5 bits (63), Expect = 9.9
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 44 PRVLSCLHVFCEACIDKLMVNEAGDSLKFDLAVECPICKQ 83
P VL+C HV+ AC++ M NE + K+D CPIC +
Sbjct: 294 PAVLACGHVYHAACLE-TMTNE---TEKYD--PTCPICTE 327
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,325
Number of Sequences: 28952
Number of extensions: 664956
Number of successful extensions: 2022
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1936
Number of HSP's gapped (non-prelim): 136
length of query: 857
length of database: 12,070,560
effective HSP length: 87
effective length of query: 770
effective length of database: 9,551,736
effective search space: 7354836720
effective search space used: 7354836720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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