Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000964-TA|BGIBMGA000964-PA|IPR011041|Soluble
quinoprotein glucose dehydrogenase, IPR006530|YD repeat, IPR001258|NHL
repeat
         (1954 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   3.9  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    24   8.9  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    24   8.9  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    24   8.9  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    24   8.9  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 1639 SLAPQLYPDELPGGSVLPSIP 1659
            S+  +LYP  +PG S  P++P
Sbjct: 317  SVMTELYPSPVPGHSTSPNLP 337


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 1781 VHGDQQDVFYFVKEETWRAADDKQQL 1806
            V  DQQ V Y  K++ W   DD++ +
Sbjct: 309  VFDDQQKVPYKYKDDQWIGYDDEESV 334


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 934 LLEAALPIEAEMLHMWSHQTTTFG-DGLTNN-MYSL 967
           +LE+A+P++  +LH    +TT+   D LT   +YS+
Sbjct: 73  ILESAIPMKGRLLHDLKGRTTSVPYDALTGQCIYSI 108


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 934 LLEAALPIEAEMLHMWSHQTTTFG-DGLTNN-MYSL 967
           +LE+A+P++  +LH    +TT+   D LT   +YS+
Sbjct: 73  ILESAIPMKGRLLHDLKGRTTSVPYDALTGQCIYSI 108


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 934 LLEAALPIEAEMLHMWSHQTTTFG-DGLTNN-MYSL 967
           +LE+A+P++  +LH    +TT+   D LT   +YS+
Sbjct: 73  ILESAIPMKGRLLHDLKGRTTSVPYDALTGQCIYSI 108


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,528
Number of Sequences: 317
Number of extensions: 21729
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 5
length of query: 1954
length of database: 114,650
effective HSP length: 67
effective length of query: 1887
effective length of database: 93,411
effective search space: 176266557
effective search space used: 176266557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)