Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000964-TA|BGIBMGA000964-PA|IPR011041|Soluble
quinoprotein glucose dehydrogenase, IPR006530|YD repeat, IPR001258|NHL
repeat
         (1954 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37318| Best HMM Match : RHS_repeat (HMM E-Value=0)                  41   0.011
SB_17560| Best HMM Match : RHS (HMM E-Value=1.5)                       38   0.11 
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)            36   0.33 
SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)            36   0.43 
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)               33   1.7  
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)                 33   3.0  
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   7.0  
SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   7.0  
SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)                 31   9.3  

>SB_37318| Best HMM Match : RHS_repeat (HMM E-Value=0)
          Length = 411

 Score = 40.7 bits (91), Expect = 0.011
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 15/126 (11%)

Query: 1351 NVKNYTWDCDGQLTGVEAQEPWGFR--YDDNGNMLS-LTYRGNTIPMEYNDMDRIIKFGE 1407
            N+ +Y+++  GQLTGV   +    R  +++ G +L  L   G +    Y+D+ R +    
Sbjct: 78   NITDYSYNKYGQLTGVWFPDNSCHRLVWNERGQLLEELLPNGGSKRYRYDDLGRQVA--- 134

Query: 1408 GQYRYDSRGLVSQNAREERFQYNSKGLLIRATKRGRFDVRYYYDHLDRLSTRKDNFGNVT 1467
               R D +G ++Q      +Q++S G LIR    G     Y Y+   +++   D   +VT
Sbjct: 135  ---REDEQGALTQ------YQWDSVGRLIRVVLPGGATREYSYNAYGKITAEHDELAHVT 185

Query: 1468 QFFYTN 1473
            ++ Y +
Sbjct: 186  RYEYAD 191



 Score = 37.5 bits (83), Expect = 0.11
 Identities = 42/199 (21%), Positives = 82/199 (41%), Gaps = 14/199 (7%)

Query: 1019 YDVAGLPLSFNPHGAGMPLNISYDRFYRINGWKWGESEETYSYDPHGMLSEISSPQDGTK 1078
            YD AG  ++  P G   P +  +D  + +   + GE+   Y  +  G ++  + P     
Sbjct: 23   YDEAGRLVALFP-GDDEPTSYEHDNGF-VRVVRRGEAVWKYERNDQGDVTRKTDPDGNIT 80

Query: 1079 FIYYNEGNLVSKITLASQRSFKYTYDKEGGLTHVILPSGSNHTFSVQPSIGFLRVTYTPS 1138
               YN+   ++ +        +  +++ G L   +LP+G +  +     +G         
Sbjct: 81   DYSYNKYGQLTGVWFPDNSCHRLVWNERGQLLEELLPNGGSKRYRYD-DLGRQVAREDEQ 139

Query: 1139 GSSKKYLQHYSHTGELLQTVFPVDGARVVYRYFTTNKVS----EVIHGDGQTQIHYSENS 1194
            G+  +Y   +   G L++ V P  GA   Y Y    K++    E+ H    T+  Y++  
Sbjct: 140  GALTQY--QWDSVGRLIRVVLP-GGATREYSYNAYGKITAEHDELAH---VTRYEYADGL 193

Query: 1195 GLPSEILHVD-RDVDYRWE 1212
             L S  ++ D   V YR++
Sbjct: 194  HLISRRINADGTHVKYRYD 212



 Score = 33.9 bits (74), Expect = 1.3
 Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 15/208 (7%)

Query: 1059 YSYDPHGMLSEISSPQDGTKFIYYNEGNLVSKITLASQRSFKYTYDKEGGLTHVILPSGS 1118
            YSY+ +G L+ +  P +    + +NE   + +  L +  S +Y YD  G         G+
Sbjct: 82   YSYNKYGQLTGVWFPDNSCHRLVWNERGQLLEELLPNGGSKRYRYDDLGRQVAREDEQGA 141

Query: 1119 NHTFSVQPSIGFLRVTYTPSGSSKKYLQHYSHTGELLQTVFPVDGARVV-YRYFT-TNKV 1176
               +    S+G L     P G++++Y   Y+  G++  T    + A V  Y Y    + +
Sbjct: 142  LTQYQ-WDSVGRLIRVVLPGGATREY--SYNAYGKI--TAEHDELAHVTRYEYADGLHLI 196

Query: 1177 SEVIHGDGQTQIHYS-ENSGLPSEILHVDRDVDYRWEFTYIGGLLTEERLDYGAKTGLSN 1235
            S  I+ DG T + Y  +N+ L    +  +    Y+ ++ +  GL+ +E    G +T    
Sbjct: 197  SRRINADG-THVKYRYDNARLLLTSIENEAGETYQLDY-HPNGLIQQEIGFDGQRTA--- 251

Query: 1236 AKIIYEYDSNYRITSVQGRIGGQTLIPY 1263
               +Y+ + N    +  G  G Q +  Y
Sbjct: 252  --YVYDLNGNLAEKTEHGDDGSQLVTRY 277



 Score = 33.5 bits (73), Expect = 1.7
 Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 1410 YRYDSRG-LVSQ-NAREERFQYNSKGLLIRATKRGRFDVRYYYDHLDRLSTRKDNFGNVT 1467
            Y+YD  G LV+     +E   Y      +R  +RG    +Y  +    ++ + D  GN+T
Sbjct: 21   YQYDEAGRLVALFPGDDEPTSYEHDNGFVRVVRRGEAVWKYERNDQGDVTRKTDPDGNIT 80

Query: 1468 QFFYTNKEKPHEVSHIYSPRENRFMTLVYDDRGHLI 1503
             + Y    K  +++ ++ P +N    LV+++RG L+
Sbjct: 81   DYSY---NKYGQLTGVWFP-DNSCHRLVWNERGQLL 112


>SB_17560| Best HMM Match : RHS (HMM E-Value=1.5)
          Length = 304

 Score = 37.5 bits (83), Expect = 0.11
 Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 4/54 (7%)

Query: 1562 LLDQVTSLVHMANGKVYDPLIGQWMSPLWENLIERIHNPTELHLYRFNGNDPIN 1615
            +LD + SLVHM NG++YDP+I +++S   +  I+ +++   L+ Y +  N+P+N
Sbjct: 196  MLDDM-SLVHM-NGRLYDPIIARFVSS--DPFIDTLYSTQGLNSYSYVLNNPLN 245


>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
          Length = 820

 Score = 35.9 bits (79), Expect = 0.33
 Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 9/138 (6%)

Query: 1061 YDPHGMLSEISSPQDGTKFIYYNEGNLVSKITLASQRSFKYTYDKEGGLTHVILPSGSNH 1120
            Y P G L     P    +  YY  GNL S+   +   + +  Y   G L     PSG+ H
Sbjct: 247  YYPSGNLQSRYYPSGNLQSRYYPSGNLQSRYYPSG--NLQSRYYPSGNLQSRYYPSGNPH 304

Query: 1121 TFSVQPSIGFLRVTYTPSGSSKKYLQHYSHTGELLQTVFPVDGARVVYRYFTTNKVSEVI 1180
              S     G L+  Y PSG+ +     Y  +G      +P     +  RY+ +  +    
Sbjct: 305  --SRYYPFGNLQSRYYPSGNLQ---SRYYPSGNPQSRYYP--SGNLQSRYYPSGNLQSRY 357

Query: 1181 HGDGQTQIHYSENSGLPS 1198
            +  G  Q  Y  +  L S
Sbjct: 358  YPSGNLQSRYYPSGNLQS 375



 Score = 33.1 bits (72), Expect = 2.3
 Identities = 36/138 (26%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 1061 YDPHGMLSEISSPQDGTKFIYYNEGNLVSKITLASQRSFKYTYDKEGGLTHVILPSGSNH 1120
            Y P G L     P    +  YY  GNL S+   +   + +  Y   G L     PSG N 
Sbjct: 137  YYPSGNLQSRYYPSGNPQSRYYPSGNLQSRYYPSG--NLQSRYYPSGNLQSRYYPSG-NL 193

Query: 1121 TFSVQPSIGFLRVTYTPSGSSKKYLQHYSHTGELLQTVFPVDGARVVYRYFTTNKVSEVI 1180
                 PS G L+  Y PSG+ +     Y  +G      +P     +  RY+ +       
Sbjct: 194  QSRYYPS-GNLQSRYYPSGNPQ---PRYYPSGNPQSRYYP--SGNLQSRYYPSGNPQSRY 247

Query: 1181 HGDGQTQIHYSENSGLPS 1198
            +  G  Q  Y  +  L S
Sbjct: 248  YPSGNLQSRYYPSGNLQS 265


>SB_32532| Best HMM Match : RHS_repeat (HMM E-Value=3.2e-06)
          Length = 618

 Score = 35.5 bits (78), Expect = 0.43
 Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 9/138 (6%)

Query: 1061 YDPHGMLSEISSPQDGTKFIYYNEGNLVSKITLASQRSFKYTYDKEGGLTHVILPSGSNH 1120
            Y P G L     P    +  YY  GNL S+   +   + +  Y   G L     PSG N 
Sbjct: 100  YYPSGNLQSRYYPSGNPQSRYYPSGNLQSRYYPSG--NLQSRYYPSGNLQSRYYPSG-NL 156

Query: 1121 TFSVQPSIGFLRVTYTPSGSSKKYLQHYSHTGELLQTVFPVDGARVVYRYFTTNKVSEVI 1180
                 PS G L+  Y PSG+       Y   G L    +P     +  RY+ +  +    
Sbjct: 157  QSRYYPS-GNLQSRYYPSGNPH---SRYYPFGNLQSRYYP--SGNLQSRYYPSGNLQSRY 210

Query: 1181 HGDGQTQIHYSENSGLPS 1198
            +  G  Q  Y  +  L S
Sbjct: 211  YPSGNPQSRYYPSGNLQS 228



 Score = 32.3 bits (70), Expect = 4.0
 Identities = 36/138 (26%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 1061 YDPHGMLSEISSPQDGTKFIYYNEGNLVSKITLASQRSFKYTYDKEGGLTHVILPSGSNH 1120
            Y P G L     P    +  YY  GNL S+   +     +Y     G L     PSG N 
Sbjct: 390  YYPSGNLQSRYYPSGNLQSRYYPSGNLQSRYYPSGNPQSRYY--PSGNLQSRYYPSG-NL 446

Query: 1121 TFSVQPSIGFLRVTYTPSGSSKKYLQHYSHTGELLQTVFPVDGARVVYRYFTTNKVSEVI 1180
                 PS G L+  Y PSG+ +     Y  +G      +P     +  RY+ +       
Sbjct: 447  QPRYYPS-GNLQSRYYPSGNLQ---SRYYPSGNPQSRYYP--SGNLQSRYYPSGNPQSRY 500

Query: 1181 HGDGQTQIHYSENSGLPS 1198
            +  G  Q  Y  +  L S
Sbjct: 501  YPSGNPQSRYYPSGNLQS 518


>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
          Length = 1508

 Score = 33.5 bits (73), Expect = 1.7
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 1514 IATDQCGTPVMVFNQYGEGIREIMRSPYGHIVYDSNPYLYLPVDFCGGLLDQVTSLV-HM 1572
            +  D  G P  + +  GEG+R++   PY  I+Y        P +F  GL   V SL+ H+
Sbjct: 1426 LGLDVLGNPYALISGIGEGVRDLFYEPYQGIIYG-------PQEFAEGLARGVKSLLGHV 1478

Query: 1573 ANG 1575
              G
Sbjct: 1479 VGG 1481


>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
          Length = 1477

 Score = 32.7 bits (71), Expect = 3.0
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 1374 FRYDDNGNMLSLTYRGNTIPMEYNDMDR--IIKFGEG---QYRYDSRGL---VSQNAR-- 1423
            + +D  GN++  T +  T+ +EYN  +R   +K+ +G   +YRY+  G    +S+N+   
Sbjct: 13   YLHDSRGNLIMATNKHGTVSIEYNKNNRPVSVKYPDGRLIEYRYNRMGRRIGISENSTGY 72

Query: 1424 EERFQYNSKGLLIRATKRGRFDVRYYYDHLDRLSTRKDNFGN 1465
               ++Y+    L      G  +V    +H    S  +  FGN
Sbjct: 73   NVTYRYDQFNRLSEVWSNG--EVLMRMEHNSTGSNERRVFGN 112


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 31.5 bits (68), Expect = 7.0
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 1395 EYNDMDRIIKFGEGQYRYDSRGLVSQNAREERFQYNSKGLLIRATKRGRFDVRYYYDHLD 1454
            EY D  R  +   G Y   SR     + R  R  Y  +    R +   R     Y ++  
Sbjct: 1399 EYQDDPRDNRDSYGDYSRSSRSSYEDHPRSSRSSYEDRSRDSRGSYGARDSYGSYPEYSR 1458

Query: 1455 RLSTRKDNFGNVTQFFYTNKEKPHEVSHIYSPRENRFMTLVYDD 1498
                   N    ++  Y +  + + +S  Y PR+NR   L+Y++
Sbjct: 1459 DSRGGYANLSRDSRHGYDDHTRDNRMSGDYEPRDNR---LIYEE 1499


>SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 31.5 bits (68), Expect = 7.0
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 428 GDDSNCGDEGPAIKAKLAHPKGLAIAADRT---MYIAD--GTNIRAVD-PNGIIHTLVXX 481
           G++ N  +  P  KA  A P GLA+A   T   +++AD   +++R VD   G    +V  
Sbjct: 392 GNEENRNNSYPH-KAAFAQPSGLAVAISNTLRCLFVADSESSSVRCVDIETGATKAVVGA 450

Query: 482 X---XXXXXWSPVPCRGAIPPYEAQLQWPTGVALSPLDGSLYFIDDRIILKLTVDMKIKV 538
                    +  V  +G     +A+ Q P GVA +P        +D +++  + + KIK 
Sbjct: 451 DRDPMNLFAFGDVDGKGV----DAKFQHPLGVAWNPQ-------EDHLLVADSYNHKIKT 499

Query: 539 IAGQPSHC-RLTSDGKPITKATNKT-NTEFKEDSNLGTILAIAFAPSGILYVAESDSKKT 596
           +  +   C      GKP     ++       +DS     + IA   + ++ V +  +K T
Sbjct: 500 VEPKQKTCSTFLGHGKPDPDVLDEPGGLCISQDSKR---MYIADTNNHVIRVVDLQTKTT 556

Query: 597 NTIKT 601
             ++T
Sbjct: 557 AVVRT 561


>SB_44015| Best HMM Match : TPR_2 (HMM E-Value=7.3e-07)
          Length = 635

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 406 EKVRDPSVNSEPVVGNGDRCVPGDDSNCGDEGPAIKAK-LAHPKGLAIAADRTMYIADGT 464
           +KV   SV + P   NG +C P ++S     GP IK K + H +   +A    + +  G 
Sbjct: 511 QKVPFLSVPTAPKGENGTKCQPYENSIPAAPGPPIKIKEVPHLRNSILACSAYVSLGLGD 570

Query: 465 NIRAV 469
           N+ A+
Sbjct: 571 NVTAL 575


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,252,578
Number of Sequences: 59808
Number of extensions: 2931164
Number of successful extensions: 6769
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6720
Number of HSP's gapped (non-prelim): 39
length of query: 1954
length of database: 16,821,457
effective HSP length: 93
effective length of query: 1861
effective length of database: 11,259,313
effective search space: 20953581493
effective search space used: 20953581493
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)