GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000964-TA|BGIBMGA000964-PA|IPR011041|Soluble
quinoprotein glucose dehydrogenase, IPR006530|YD repeat, IPR001258|NHL
repeat
         (1954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    30   2.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   2.8  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    30   3.7  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    29   4.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   8.6  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    29   8.6  

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 1043 RFYRINGWKWGESEETYSYDPHGMLSEISSPQDGTKFI--YYNEGNLVSKI-TLASQRSF 1099
            ++  IN  + G       Y   G+L  IS PQDG + +  +   G++++ I + +S  S 
Sbjct: 220  QYVSINRLEKGPRRAIRVYSREGLLDSISEPQDGQQSLLSWKPSGSVLATIKSDSSDNSS 279

Query: 1100 KYTYDKEGGLTH 1111
            K  + +  GL H
Sbjct: 280  KVIFFERNGLRH 291


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 10/157 (6%)

Query: 539 IAGQPSHCRLTSDGKPITKATNKTNTEFKEDSNLGTILAIAFAPSGILYVAESD---SKK 595
           I G  +    +S   P+T +TN+T+T F   +++ T  + + A S   + +ES    S  
Sbjct: 625 ITGTSTSKVTSSTSIPLT-STNRTSTTFTSSTSIST-SSSSTATSSTSFASESSSFYSNV 682

Query: 596 TNTIKTIDPSGKIMHFAGKLPENLKELSCECNMTMSATAVPLNNRDEG-----AGCPCRL 650
           T +  T+        F      +    S   ++  ++T V   +   G     A      
Sbjct: 683 TTSSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGS 742

Query: 651 SVAAGDEPPTSTETLLSSNAKFQTISALAVTPDGVLN 687
           S ++   P +ST T  SS +  Q+ S+ + TP   ++
Sbjct: 743 SSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPSSAIS 779


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 326 KAADSRLLTPTALTSGPDGSLYVGDFNLVRRITPEGVVITVLKLE 370
           K  ++  +T  A TS  +  + VGD  LV+ IT EGV   ++ L+
Sbjct: 179 KLEEAMKITTDAFTSAGERHIEVGDSVLVKIITKEGVETRIIPLK 223


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 449

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 1712 MSALKTDALDLAPKRIGSDSEPPFGRGILVSRNSRGRAV-VTAVPSANAIYRDVYTSVF 1769
            +S L T   +LA   + S + PPFG     SR S   A+ +  V ++  +Y +V    F
Sbjct: 35   LSGLNTPVGELATSNLPSPAHPPFGELHQESRTSNSSAMHIENVVASRLMYNEVANGSF 93


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 1506 QVARHKYYIA--TDQCGTPVMVFNQYGEGIREIMRSPY-GHIVYDSNPY 1551
            QV    Y IA   D  G PV +FN    G+ ++   PY G ++ DS  +
Sbjct: 2683 QVGYQIYKIAGRADFLGNPVGLFNNVASGVFDMFYEPYQGFLLQDSQSF 2731


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 620 KELSCECNMTMSATAVPLNNRDEGAGCPCRLSVAAGDEP-----PTSTETLLSSNAKFQT 674
           K ++C     + A    L N  +GA   C +     D+P     P + E   ++ A+ Q 
Sbjct: 116 KSIACSDRQVVYADGSSLRNGKKGAVAGCGVFFG-NDDPRNISVPLAGEEQTNNRAELQA 174

Query: 675 ISALAVTPDGVLNVVDQGSLHILALRHYLPSHDENGEFRIPYPPTSEIYVFNRYGQHITT 734
           I        G L +    +  I +L  +LP   +N        P   + + NR    ++ 
Sbjct: 175 IILALENTSGDLTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKNLDLINRASDLMSD 234

Query: 735 KDLT 738
           ++++
Sbjct: 235 RNVS 238


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,828
Number of Sequences: 5004
Number of extensions: 407315
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 6
length of query: 1954
length of database: 2,362,478
effective HSP length: 84
effective length of query: 1870
effective length of database: 1,942,142
effective search space: 3631805540
effective search space used: 3631805540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)