Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000964-TA|BGIBMGA000964-PA|IPR011041|Soluble
quinoprotein glucose dehydrogenase, IPR006530|YD repeat, IPR001258|NHL
repeat
(1954 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 34 1.00
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 33 2.3
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 32 5.3
02_03_0268 + 17100666-17101235 31 7.0
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 31 7.0
01_01_0635 - 4795434-4795461,4795897-4797365 31 7.0
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 31 9.3
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 31 9.3
01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841 31 9.3
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 34.3 bits (75), Expect = 1.00
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 385 ADGYLYISDSERHQVRRVLALEKVRDPSVNSEPVVGNGDRCVPGDDSNCGDEGPAIKAKL 444
+D +Y++DS H+++R+ DP + R D GPA+ A+L
Sbjct: 818 SDNQIYVADSYNHKIKRL-------DPVTRKVTTIAGTGRAGYKD-------GPALSAQL 863
Query: 445 AHPKGLAIAADRTMYIADGTN 465
+ P GL D + +AD N
Sbjct: 864 SEPAGLVEVGDGRLLVADTNN 884
>06_03_0849 - 25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 33.1 bits (72), Expect = 2.3
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 1557 DFCGGLLDQVTSLVHMANGKVYDPLIGQWMSPLWENLIERIHNPTELHLYRFNGNDPINV 1616
+F G L ++++V + + L+ Q + ++ NL + ++ NGN PI++
Sbjct: 137 NFSGNLPYSISNMVSLNYLNLSHNLLFQEIGEMFGNLTAL--SELDVSFNNLNGNLPISL 194
Query: 1617 RPQFKKPTDHLAWLKLLGYETKSLAPQLYPDELPGGSVLPSIPQGRPVWGTAPTASSPGL 1676
R +L +L G T ++ L L GG+ ++P P T+P P
Sbjct: 195 RSLSNISGIYLQNNQLSG--TVNVLSNLSLTTLLGGNSFLNVPSSPPSTITSPPQGQPDF 252
Query: 1677 PFGMSLLPSV 1686
P G + P++
Sbjct: 253 PQGPTTAPNI 262
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 31.9 bits (69), Expect = 5.3
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 901 KQITEGRIFTNNTLVLDTPWSG--KLESIAAAKHPLLEAALPIEAEMLHMWSHQTT--TF 956
+ + + RI +L+ +G + ES+A A LEA + M++ W +TT F
Sbjct: 647 RSLQDLRISNKQLRLLEETLAGAFRRESVAEATVKQLEAEIEQLNRMVNFWWQETTFVIF 706
Query: 957 GDGLTNNMYSLYTLVGDVRNPQQTLN-REIWVNDSRVLIIEFDQFKSKETLFNTDRNLLF 1015
+G+ N + +Y D R+ + TL RE ++ L+ D+ ++ L + LL
Sbjct: 707 LEGIINGLL-VYERENDTRSAKMTLKFREDKIHQMEALV--RDKLPAESYLLEENNTLLK 763
Query: 1016 TISYDVAGLPLSFNP 1030
I D+ + NP
Sbjct: 764 EI--DLLRAKIDKNP 776
>02_03_0268 + 17100666-17101235
Length = 189
Score = 31.5 bits (68), Expect = 7.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 260 LAGFGVDISDIGGWGLDIHHHYNFHEGILQKGDGALLHLKQ 300
+ G G + +D GGWG+D+ + +++ G G+ L K+
Sbjct: 106 IGGVGEEAADAGGWGMDVAAAGSTSSNLVKAGSGSRLSRKR 146
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 31.5 bits (68), Expect = 7.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 322 HCNGKAADSRLLTPTALTSGPDGSLYVGD-FNL-VRRITPEGV 362
H +GK +D+R PT + G++YV D NL +R+I GV
Sbjct: 139 HIDGKPSDARFKRPTGVAVDDTGNVYVADTANLAIRKIGESGV 181
>01_01_0635 - 4795434-4795461,4795897-4797365
Length = 498
Score = 31.5 bits (68), Expect = 7.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 1026 LSFNPHGAGMPLNISYDRFYRINGWKWGESEETYSYD 1062
++ N HG G + S R + I W W E ++T+ D
Sbjct: 350 VNVNQHGGGSSSSSSSSRSFSITLWSWREEDQTWGED 386
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 31.1 bits (67), Expect = 9.3
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 10/147 (6%)
Query: 1154 LLQTVFPVDGARVVYRYFTTNKVSEVIHG-DGQTQIHYSENSGLPSEILHVDRDVDYRWE 1212
LL VD +VY + + +SE +HG D +T I + ++ +
Sbjct: 519 LLGCCLEVDVPMLVYEFVSNGTLSEFLHGNDHRTPIPLDLRLNIATQSAEALAYIHSSTS 578
Query: 1213 FTYIGGLLTEERL----DYGAKTGLSNAKIIYEYDSNYRITSVQGRIG---GQTLIPYHI 1265
T + G + + +Y AK A + D N I +QG +G +T + +H+
Sbjct: 579 RTILHGDVKSLNILLDDEYNAKVADFGASTLKSMDRNDFIMFIQGTLGYLDPETFVSHHL 638
Query: 1266 VYNSKTGA--PEILGQFTVSKQRWNET 1290
S T + +L T K +N+T
Sbjct: 639 TDKSDTYSFGVVLLEIMTRKKALYNDT 665
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 31.1 bits (67), Expect = 9.3
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 1658 IPQGRPVWGTAPTASSPGLPFGMSLL-PSVTIESGFLSHMSNKRIADFRSLSIPAMSALK 1716
+P+G WG+ PT ++P SLL P S SH + + + S S
Sbjct: 41 VPKGTLTWGSKPTPTTPNAWNSSSLLSPKNDGSSNSPSHFNGRPSSGGGS----RPSTAG 96
Query: 1717 TDALDLAPKRIGSDSEPPFGRGILVSRN 1744
+++LD +P GS S P G L S +
Sbjct: 97 SESLD-SPNAWGSSSRPSTASGTLPSNH 123
>01_05_0573 + 23359968-23361044,23361112-23361255,23361458-23361841
Length = 534
Score = 31.1 bits (67), Expect = 9.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 641 DEGAGCPCRLSVAAGDEPPTSTETLLSSN 669
D GA C C+L VA+ +PP + +LS+N
Sbjct: 27 DLGADCMCKLLVASLPDPPVYPDAVLSAN 55
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,021,442
Number of Sequences: 37544
Number of extensions: 2666721
Number of successful extensions: 5477
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5462
Number of HSP's gapped (non-prelim): 20
length of query: 1954
length of database: 14,793,348
effective HSP length: 93
effective length of query: 1861
effective length of database: 11,301,756
effective search space: 21032567916
effective search space used: 21032567916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)
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